Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0954 ATGAGAAAAACTCTCAATGAAAGTGAAGATGGCATGGTTAGTTTGGCATTGATTTGTTCTTTTAATAGAATGCGAAAGCATCTTAGTTTGGATGATGTAAAACCTGACCAAGTATCACAAGATACTATTGATGCAGTTTCTCAAGTTTTGAGGAATGCACCTTCACTCAAGGTCTCCGAGGATGGGAAAAAGGTTGGCAGAGCAACTGAACTTCCGAAGGTAGAAGAGTTAATCGAGCAGGTGGAGATAAGAACATTTGCTGCATCACCATTTGAACATGATCTAAAGCTTGAAGATGTTGAAACCTTCTTTAATCAATATGCCAAGGTCAATAGTGTCCGGCTGCCCCGTCATGTTGGAGACAAAAAGTTGTTCTGTGGCACTGCACTTGTTGAATTCTCAACAGAGGAGGAAATAGAAAAAGTCTTGAAGCAAAAACTTGTCTATGCTAGTGCTGAGTTAGAATTGAAACCAAAGAAGGAGTTTGATGCAGAGAGAGAAAAGGAATTAGAAGCCTATGAAAAATCTCGTCCACCTTTGGGTTCTAATCGCCAGAATAACTCAAATGAAGAAGAAAGCTACCCTAAAGGCTTAATCATTGCCATAAAAATAAAGAGCATTTCGGACGAAGTTCCTTCAAAACAAAATGGTGTCTCCAAAGCACAGGGAAAACCCTCTGAAACTACTGCTGGGGAAAGTGATCAAAAGGTATCAGAGATTGTTGACAATGGTCAAGAAAATAACGGGACCAAAAAAGAAAACGAAACTGTTAATGCAGAAAATAGTCAAGAAACTGGTGAAAAAAATCCAGCTTCTGCTTACAAGGACAACATGGATGTTGTCTTGCGTGAGGATTTGAAGAGTGTCTTTGAGAAGTTCGGTACAGTGAAGTACATTGATTTCAAGATTGGAGCAGAGTTAGGATACATTCGTTTTGAAGATGCTGAAGCTGCGCAGAAAGCTCGTGCTGCTGCAGTTCTTTCTGAGAAGGACGGCTTGGCTGTGAAGAATTTTATTGCTATTATAGATCCAGTGACTGGTGAGGCTGAAAAAGAATACTGGACTTTGCTTCGTGGTAGTCAAAAGGACAAGCACCAAAACTTTAAGGGTAACCGAGGAAGAGGAGGAGGAAGGCACGGCGGTAGAGGAGCGAAGCATGGGCGCTCTAGAGATAATGAAAGGAGTCGCCCACATAAAGCTCAGAAAGTTGGAGCTGCATAA 1221 0.412 MRKTLNESEDGMVSLALICSFNRMRKHLSLDDVKPDQVSQDTIDAVSQVLRNAPSLKVSEDGKKVGRATELPKVEELIEQVEIRTFAASPFEHDLKLEDVETFFNQYAKVNSVRLPRHVGDKKLFCGTALVEFSTEEEIEKVLKQKLVYASAELELKPKKEFDAEREKELEAYEKSRPPLGSNRQNNSNEEESYPKGLIIAIKIKSISDEVPSKQNGVSKAQGKPSETTAGESDQKVSEIVDNGQENNGTKKENETVNAENSQETGEKNPASAYKDNMDVVLREDLKSVFEKFGTVKYIDFKIGAELGYIRFEDAEAAQKARAAAVLSEKDGLAVKNFIAIIDPVTGEAEKEYWTLLRGSQKDKHQNFKGNRGRGGGRHGGRGAKHGRSRDNERSRPHKAQKVGAA* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0954 406 SUPERFAMILY RNA-binding domain, RBD 79 145 IPR035979 GO:0003676
Lan15g0954 406 SMART la 2 68 IPR006630 -
Lan15g0954 406 MobiDBLite consensus disorder prediction 371 385 - -
Lan15g0954 406 Pfam RNA binding motif 281 372 IPR014886 GO:0003723
Lan15g0954 406 Gene3D - 1 75 IPR036388 -
Lan15g0954 406 MobiDBLite consensus disorder prediction 361 406 - -
Lan15g0954 406 MobiDBLite consensus disorder prediction 386 400 - -
Lan15g0954 406 MobiDBLite consensus disorder prediction 212 271 - -
Lan15g0954 406 SMART rrm1_1 272 336 IPR000504 GO:0003723
Lan15g0954 406 SMART rrm1_1 85 157 IPR000504 GO:0003723
Lan15g0954 406 ProSiteProfiles xRRM domain profile. 265 386 IPR014886 GO:0003723
Lan15g0954 406 ProSiteProfiles La-type HTH domain profile. 1 75 IPR006630 -
Lan15g0954 406 SUPERFAMILY RNA-binding domain, RBD 283 366 IPR035979 GO:0003676
Lan15g0954 406 PANTHER BNAANNG34180D PROTEIN 2 405 - -
Lan15g0954 406 MobiDBLite consensus disorder prediction 163 192 - -
Lan15g0954 406 Gene3D - 78 174 IPR012677 -
Lan15g0954 406 MobiDBLite consensus disorder prediction 212 270 - -
Lan15g0954 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 145 IPR000504 GO:0003723
Lan15g0954 406 PANTHER LUPUS LA PROTEIN-RELATED 2 405 IPR045180 -
Lan15g0954 406 CDD RRM1_La 85 157 - -
Lan15g0954 406 Gene3D - 272 372 IPR012677 -
Lan15g0954 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 169 IPR000504 GO:0003723
Lan15g0954 406 SUPERFAMILY "Winged helix" DNA-binding domain 1 71 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0954 Lan-Chr15 18843602 18846843 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0954 K11090 - gmx:100786016 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0954 15 18843602 18846843 Lan3g1502 3 26542422 26546151 LSH