Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1284 ATGGCCTTCATCATCTCAAAGCTACGTTTGCACCACTCTCTCTTACCACACACTTTCAAACTCTACTCTTCTACTTCATCTTTACTTTCAGAACCTCTTCTCCAACATGACTTAAACCACACTAATCTATCAACCCTAGAAGAAACAAACATAGTTGAAAAATTCCACTCCCTCATTAAAGACCACTATAGCAAAAACCCTAACCCGGACCTTAACCCTACCCCACCCACCCCGAACCTTATTATACCCGATCTCTCTATAGAATTCGCGAAGATCTCCACCGTTCATTTACTCACACCCTCAATCGCACGAAGGGTTATAGAGAAATGCGGTGGGGTCCACCATGGAATACCGTTTCACCAATCACTCGGGTTTTTCAACTGGGCCACTACTCTCGACGGGTTCCCTTTGTCGCCTGAGCCCTACAATGAGATAATCGACCTCGCCGGAAAGCTCAGGCACTTCGAATTGGCATGGCATTTGATCGATTTGATGAAATCTCGTGGCGTTGGGATTACCATTGACACGTTCTCTATCCTCGTCCGGCGATACGTGAGAGCTGGACTTGCTGCTGAGGCAGTTCACGCGTTTAATCGAATGGAGGAATATGGTTGTAAGCCTGATAAGGTTGCATTTTCAATTGTGATCAGTATGTTGTGTAAGAAGAGGAGAGCGAGTGAGGCGCAATCGTTTTTCGATAGCCTTAAGGATAAGTTTGAGCCGGATGTTATAGTGTACACTAGCTTGGTTCATGGTTGGTGTCGCGCTGGTGATATATCGAAGGCTGAGGAGGTATTCAGGGATATGAAGGTGGCAGGAATCAAGCCTAATGTTTATACTTATAGCATTGTGATTGACTCGCTGTGTCGGTGTGGTCAGATTAGTCGCGCACATGATGTTTTTGCGGAGATGATAGATTCGGGTTGTGATCCGAATGTGGTTACTTTTAATAGTCTAATGAGGGTTCATGTGAAGGCTAAGAAGACTGAAAAGGTTTTGCAGGTTTTTAATCAGATGAAGAGGCTCGGTTGTGATCCTGATACAATTAGCTATAATTTTCTAATTGAGTGTCATTGTAGAGATGGGAATCTCGACGAAGCTGTGAAGGTTCTCAATTTGATGGTTCTGAAAGGGGTTGATCCTAATGTGTCCACTTTCAATTCAATTTATGGACGCATTGCTAATTTACATGACGTTAATGGCGCTCATCGGATGTATGCTAAAATGAAGGAACTGAAGTGTCAGCCTAATACACTGACGTATAATATATTGATGAGAATGTTTGCTGACTCTAAATCAACTGATATGGTTCTGAAATTAAAGAAGGAAATGGACGAGAATCAAGTTGAACCTAATGTGAATACTTATCGAATTTTGATTATGTTGTATTGTGCAATGGGGCACTGGAACAATGCCTACAAGTTAATGAAGGAGATGGTAGTGGAGAAAGGCCTAAATCCAAATCTATCAGTTTATGAAATGGTTCTAGAGCTGCTGAGGAATGCAGGACAGCTTAAAATGCACGAGGAGTTGGTGGATAAGATGGTTGCAAGGGGATTTGTCTCTCGCCCGTTGTAG 1578 0.429 MAFIISKLRLHHSLLPHTFKLYSSTSSLLSEPLLQHDLNHTNLSTLEETNIVEKFHSLIKDHYSKNPNPDLNPTPPTPNLIIPDLSIEFAKISTVHLLTPSIARRVIEKCGGVHHGIPFHQSLGFFNWATTLDGFPLSPEPYNEIIDLAGKLRHFELAWHLIDLMKSRGVGITIDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCKPDKVAFSIVISMLCKKRRASEAQSFFDSLKDKFEPDVIVYTSLVHGWCRAGDISKAEEVFRDMKVAGIKPNVYTYSIVIDSLCRCGQISRAHDVFAEMIDSGCDPNVVTFNSLMRVHVKAKKTEKVLQVFNQMKRLGCDPDTISYNFLIECHCRDGNLDEAVKVLNLMVLKGVDPNVSTFNSIYGRIANLHDVNGAHRMYAKMKELKCQPNTLTYNILMRMFADSKSTDMVLKLKKEMDENQVEPNVNTYRILIMLYCAMGHWNNAYKLMKEMVVEKGLNPNLSVYEMVLELLRNAGQLKMHEELVDKMVARGFVSRPL* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1284 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Lan3g1284 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Lan3g1284 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Lan3g1284 525 TIGRFAM PPR: pentatricopeptide repeat domain 314 348 IPR002885 -
Lan3g1284 525 TIGRFAM PPR: pentatricopeptide repeat domain 455 488 IPR002885 -
Lan3g1284 525 TIGRFAM PPR: pentatricopeptide repeat domain 279 313 IPR002885 -
Lan3g1284 525 TIGRFAM PPR: pentatricopeptide repeat domain 420 453 IPR002885 -
Lan3g1284 525 TIGRFAM PPR: pentatricopeptide repeat domain 142 171 IPR002885 -
Lan3g1284 525 TIGRFAM PPR: pentatricopeptide repeat domain 244 278 IPR002885 -
Lan3g1284 525 TIGRFAM PPR: pentatricopeptide repeat domain 349 383 IPR002885 -
Lan3g1284 525 TIGRFAM PPR: pentatricopeptide repeat domain 176 208 IPR002885 -
Lan3g1284 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 452 487 IPR002885 -
Lan3g1284 525 Pfam PPR repeat family 416 464 IPR002885 -
Lan3g1284 525 Pfam PPR repeat family 182 221 IPR002885 -
Lan3g1284 525 Pfam PPR repeat family 241 290 IPR002885 -
Lan3g1284 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Lan3g1284 525 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 524 - -
Lan3g1284 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Lan3g1284 525 Gene3D Tetratricopeptide repeat domain 375 445 IPR011990 GO:0005515
Lan3g1284 525 Gene3D Tetratricopeptide repeat domain 237 306 IPR011990 GO:0005515
Lan3g1284 525 Gene3D Tetratricopeptide repeat domain 446 518 IPR011990 GO:0005515
Lan3g1284 525 Gene3D Tetratricopeptide repeat domain 307 374 IPR011990 GO:0005515
Lan3g1284 525 Gene3D Tetratricopeptide repeat domain 118 236 IPR011990 GO:0005515
Lan3g1284 525 PANTHER CHLOROPLAST RNA PROCESSING 1-LIKE PROTEIN 15 524 - -
Lan3g1284 525 Pfam Pentatricopeptide repeat domain 300 356 IPR002885 -
Lan3g1284 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Lan3g1284 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 238 IPR002885 -
Lan3g1284 525 Pfam PPR repeat 142 170 IPR002885 -
Lan3g1284 525 SUPERFAMILY TPR-like 207 480 IPR011990 GO:0005515
Lan3g1284 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1284 Lan-Chr3 24855772 24857527 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1284 329 521 Glycosyltransferase AT1G05670 23.737 1.29e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1284 - - gmx:100800850 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan14g0588 14 12675271 12677715 Lan3g1284 3 24855772 24857527 LSH