Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan14g0588 | ATGCTGAAAATTTACGACCATAGAAAAGTACTATTCTGCAAATGGGTCTTGTTTGCCAAAATGTATAGTACAAATGAGCTAGTCCATGATGTTGAAGATGCAACTAAAATGGTATGTAAGGCTATGATTTCATGTCCTGGAGCAACACTTGATACTGCTCTTAATCAAACTGGAGTTAGAGTTTCACCGGATTTAGTTGAAAATGTACTTAAAAGATTTGAGAATGCTGGCATGTTGGCGTTCCGGTTCTTTGATTGGGCTGAGAAGCAGAGAAACTATTCTCACAGCATCAGGGCATATCACTCGGTGATTGAGTCTCTAGCGAAGATAAGGCAGTATAAAATCATGTGGGACCTTGTTAATGCGATGAGGAAAAACGGGATGCTAAATGTGGAGACCTTTTGTATCATTATGCGGAAGTATGCTAGGGCTCAGCAGGTAGACAAGGCCATTTACACATTCAATGTCATGGAAAAATATGACATATCACCGAATCTTGCCGCGTTTAATGGTTTGTTAAGTGCTTTATGCAAGTCCAAGAATGTGAGGAAGGCTCAAGAGATCTTTGAGGAAATGAAGGATCGCTTTGTCCCAGACACAAAAACATATAGCATACTGCTTGATGGGTGGGGAAAGGATCCAAATCTTCCGAAAGCAAGAGAGATTTTTAGAGAGATGGTTGATGTGGGATGCGACCCCGACATTGTGACCTATGGCATAATGGTTGATGTTCTTTGCAAAGCAGGTAGAGTCGATGAAGCTGTTGAGGTTGTGAATGAAATGGATGCTAACAATTGTAGACCTACAACTTTCATTTACAGTGTCCTGGTTCACACTTATGGAGTGGAAAACCGGATTGATGATGCTATTGATACATTCTTGAAGATGGAAAGGAATGGAACCAAGGCAGATGTTGTGGTATATAATGCTCTGATTGGTGCTTTTTGTAAAGCGAACAGATTTAAAAATGTGCATCGAGTCTTACAAGAGATGGAAAACAATGGCATCAATCCTAATTCGAGGACCTACAATGTTATGATTTGCGGTTTGATTAGCCAGGGACAGACTGACAGAGCTTTCAGAGTCTTTCGGCAGTTAATCAAGTCATGCGAACCAGATGCTGACACTTACACAGTAATGATAAAAATGTTCTGTGAGAAAAATGAATTAGAGATGGCTTTGAAAATATGGAAGTTTATGAAGTCAAAACGGTTTGTCCCAAGCATGCACACGTTTTCAGTCCTTATCAATGGGTTGTGTCAAGAGGGCAATGTTGCAGAAGCTTGTGTTTTGATGGAAGATATGATAGAGAAGGGAATTCGACCATCAGGTGCTACATTTGGGAGGTTAAGACAGTTGCTTATTAAGGAAGGAAGAGAGGATGTTCTCAAATTTCTTCATGAGAAAATAGATCTTCTTGTCAAGGAGCCTTTATTAGACTAA | 1443 | 0.3999 | MLKIYDHRKVLFCKWVLFAKMYSTNELVHDVEDATKMVCKAMISCPGATLDTALNQTGVRVSPDLVENVLKRFENAGMLAFRFFDWAEKQRNYSHSIRAYHSVIESLAKIRQYKIMWDLVNAMRKNGMLNVETFCIIMRKYARAQQVDKAIYTFNVMEKYDISPNLAAFNGLLSALCKSKNVRKAQEIFEEMKDRFVPDTKTYSILLDGWGKDPNLPKAREIFREMVDVGCDPDIVTYGIMVDVLCKAGRVDEAVEVVNEMDANNCRPTTFIYSVLVHTYGVENRIDDAIDTFLKMERNGTKADVVVYNALIGAFCKANRFKNVHRVLQEMENNGINPNSRTYNVMICGLISQGQTDRAFRVFRQLIKSCEPDADTYTVMIKMFCEKNELEMALKIWKFMKSKRFVPSMHTFSVLINGLCQEGNVAEACVLMEDMIEKGIRPSGATFGRLRQLLIKEGREDVLKFLHEKIDLLVKEPLLD* | 481 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan14g0588 | 480 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 9 | 477 | - | - | |
| Lan14g0588 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 408 | 442 | IPR002885 | - | |
| Lan14g0588 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 202 | 235 | IPR002885 | - | |
| Lan14g0588 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 410 | 443 | IPR002885 | - | |
| Lan14g0588 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 306 | 339 | IPR002885 | - | |
| Lan14g0588 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 236 | 269 | IPR002885 | - | |
| Lan14g0588 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 376 | 408 | IPR002885 | - | |
| Lan14g0588 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 272 | 304 | IPR002885 | - | |
| Lan14g0588 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 342 | 371 | IPR002885 | - | |
| Lan14g0588 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 133 | 165 | IPR002885 | - | |
| Lan14g0588 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 168 | 195 | IPR002885 | - | |
| Lan14g0588 | 480 | Pfam | PPR repeat family | 304 | 350 | IPR002885 | - | |
| Lan14g0588 | 480 | Pfam | PPR repeat family | 164 | 209 | IPR002885 | - | |
| Lan14g0588 | 480 | Pfam | PPR repeat family | 372 | 421 | IPR002885 | - | |
| Lan14g0588 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 234 | 268 | IPR002885 | - | |
| Lan14g0588 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 199 | 233 | IPR002885 | - | |
| Lan14g0588 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 165 | 195 | IPR002885 | - | |
| Lan14g0588 | 480 | PANTHER | OS03G0761300 PROTEIN | 9 | 477 | - | - | |
| Lan14g0588 | 480 | Gene3D | Tetratricopeptide repeat domain | 332 | 477 | IPR011990 | GO:0005515 | |
| Lan14g0588 | 480 | Pfam | PPR repeat | 230 | 261 | IPR002885 | - | |
| Lan14g0588 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 373 | 407 | IPR002885 | - | |
| Lan14g0588 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 339 | 369 | IPR002885 | - | |
| Lan14g0588 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 304 | 338 | IPR002885 | - | |
| Lan14g0588 | 480 | SUPERFAMILY | HCP-like | 176 | 398 | - | - | |
| Lan14g0588 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 269 | 303 | IPR002885 | - | |
| Lan14g0588 | 480 | Gene3D | Tetratricopeptide repeat domain | 47 | 193 | IPR011990 | GO:0005515 | |
| Lan14g0588 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 130 | 164 | IPR002885 | - | |
| Lan14g0588 | 480 | Pfam | PPR repeat | 272 | 300 | IPR002885 | - | |
| Lan14g0588 | 480 | Pfam | PPR repeat | 133 | 161 | IPR002885 | - | |
| Lan14g0588 | 480 | Gene3D | Tetratricopeptide repeat domain | 263 | 331 | IPR011990 | GO:0005515 | |
| Lan14g0588 | 480 | Gene3D | Tetratricopeptide repeat domain | 194 | 262 | IPR011990 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan14g0588 | Lan-Chr14 | 12675271 | 12677715 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan14g0588 | 79 | 468 | Glycosyltransferase | AT1G05670 | 26.650 | 4.64e-36 | 140 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan14g0588 | - | - | adu:107478053 | 823.157 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lan14g0588 | 14 | 12675271 | 12677715 | Lan3g1284 | 3 | 24855772 | 24857527 | LSH |