Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1189 ATGTCGTCTCTATCACCTTCTTCTTTCGTTTTGAACGAAGAGGATTCTCCTACTTCATTGTCTTCATCATCACAAGCAAGTTTTTCTCATTTTTTGATCCAAAACCAAAACCAAAACCCAAATCCCTTTCACTCTCAGAACCAAACTGATCATTGTTTAGAAGATGCTTTTGCTCGTCTTTCTGTGTCTCCCTTTGATTTCAATTACTCATCTTCTATAGCGGGTGGGTTTTCTGCTCTTAATGGCGCATCAAATAATCACTCTTTTGATAGCCCCACTTTTCAACCTTCTCAAAGTTCCAATCTTTATGGCCAAACCCATAAGAACAATGCTGGTAATGCTGTTGGTGGTGGCGGGTTACCATCACTTCAGAATTATTGGGTTGGGTATGGAAGAGAGAAATATGTGAAGTGGAACAACCTTTCTTCTGGTTCATATCCTGCATTGAGTGCTGGCGGTTACTATTCAAGAAATAATAATGGGTTTCTTGATTCTGAGTCTTTGCTGAGACAAACTGGATCTGGAGGGGTTGTGATGAATGATAATTTTGTAGGGAATAAGTTTGATATAAATAATGGAATTACTAGTCCTAGTCCACACTGGTTGAATAATTTGAGGGGGAGGGTTGTGTTATTTGCTAAGGATCAAAGTGGATACAAGGATTTGATATCAATGATGAAAAGATTGACAGTGACAATCAATGAAACTTCTTTCATCTTCATAGAGCTTCTTGATCACGTGGTTGAGTTGATGGTTGATCCCTTTGGGAATTATGTTATTCAGAAGTTGGTGGAAATTTGCACTGAAGACCAAAGGACTCGCATCATTTTGAGGGTGATCCAGCCTAATCTTATGCTAGTCAGAATATCTCTTAATCCACATGGAACCAGGTCTGTGGAGAAATTGTTAGAGAATATTACCACTGAACAGCAACGAGCTCTTGTTATGTCAGCTCTAAGCCCTGATGCTGCTACATTGGCTACAGATACAAATGGTCATCGTGTACTCCTGCATTGTCTAAGATATTTCCCACCTGAAGATAATAAGGATCTTCTGAGAGTAGTGGCAAACCACTGTTTTGGGATTGCAACAGATAAGACTGGGTGTTGTGTGCTGCACCAATGTATCAGCTATGCTCATGGAGAAACCAAAAAGCAACTGATTGCTGAGATCATAGTAAATGCTCCACTCCTAGCAGAAGATGCCTATGGCAACTATGTTGTACAAGACTTGGTGTCTTCAAAAACACCAATAGTTACAGAATGTCTTCTGAGACAACTTGAAGGGAAGTTTTTATCTCTTTCCCGCAATAAATACGGGAGTAATGTGGTGGAGAAGTTCCTTGTAGAGGTAGGGGATCAGCATAAAAGGCGTATTATTTTGGAGTTGCTCCACAATCCAGATGTTGCAAGGCTTCTTGTGGATCCATTTGGAAATTATGTCATCAAATCTGCAGTTTCCAAGTCCAAGGGTGCTATTCAAGATGCCCTGTTGCAGCTTATCCAGCTCAACTCTCCAATGATGCGCACCAACGTCTACGGCCGGAAGTTACTAGAGAAGTTTGGCAGTGGGAGACTGCGGCGTTCATAG 1590 0.4094 MSSLSPSSFVLNEEDSPTSLSSSSQASFSHFLIQNQNQNPNPFHSQNQTDHCLEDAFARLSVSPFDFNYSSSIAGGFSALNGASNNHSFDSPTFQPSQSSNLYGQTHKNNAGNAVGGGGLPSLQNYWVGYGREKYVKWNNLSSGSYPALSAGGYYSRNNNGFLDSESLLRQTGSGGVVMNDNFVGNKFDINNGITSPSPHWLNNLRGRVVLFAKDQSGYKDLISMMKRLTVTINETSFIFIELLDHVVELMVDPFGNYVIQKLVEICTEDQRTRIILRVIQPNLMLVRISLNPHGTRSVEKLLENITTEQQRALVMSALSPDAATLATDTNGHRVLLHCLRYFPPEDNKDLLRVVANHCFGIATDKTGCCVLHQCISYAHGETKKQLIAEIIVNAPLLAEDAYGNYVVQDLVSSKTPIVTECLLRQLEGKFLSLSRNKYGSNVVEKFLVEVGDQHKRRIILELLHNPDVARLLVDPFGNYVIKSAVSKSKGAIQDALLQLIQLNSPMMRTNVYGRKLLEKFGSGRLRRS* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1189 529 Gene3D - 197 524 IPR011989 -
Lan3g1189 529 MobiDBLite consensus disorder prediction 88 116 - -
Lan3g1189 529 ProSiteProfiles Pumilio RNA-binding repeat profile. 426 462 IPR001313 GO:0003723
Lan3g1189 529 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 179 525 IPR033133 GO:0003723
Lan3g1189 529 ProSiteProfiles Pumilio RNA-binding repeat profile. 279 316 IPR001313 GO:0003723
Lan3g1189 529 ProSiteProfiles Pumilio RNA-binding repeat profile. 463 499 IPR001313 GO:0003723
Lan3g1189 529 MobiDBLite consensus disorder prediction 88 112 - -
Lan3g1189 529 ProSiteProfiles Pumilio RNA-binding repeat profile. 390 425 IPR001313 GO:0003723
Lan3g1189 529 Pfam Pumilio-family RNA binding repeat 324 352 IPR001313 GO:0003723
Lan3g1189 529 Pfam Pumilio-family RNA binding repeat 358 392 IPR001313 GO:0003723
Lan3g1189 529 Pfam Pumilio-family RNA binding repeat 287 315 IPR001313 GO:0003723
Lan3g1189 529 Pfam Pumilio-family RNA binding repeat 431 464 IPR001313 GO:0003723
Lan3g1189 529 Pfam Pumilio-family RNA binding repeat 246 277 IPR001313 GO:0003723
Lan3g1189 529 Pfam Pumilio-family RNA binding repeat 398 411 IPR001313 GO:0003723
Lan3g1189 529 Pfam Pumilio-family RNA binding repeat 471 499 IPR001313 GO:0003723
Lan3g1189 529 PANTHER PUMILIO HOMOLOG 15 86 520 - -
Lan3g1189 529 MobiDBLite consensus disorder prediction 1 23 - -
Lan3g1189 529 SMART pum_5 426 461 IPR001313 GO:0003723
Lan3g1189 529 SMART pum_5 390 425 IPR001313 GO:0003723
Lan3g1189 529 SMART pum_5 242 277 IPR001313 GO:0003723
Lan3g1189 529 SMART pum_5 281 316 IPR001313 GO:0003723
Lan3g1189 529 SMART pum_5 354 389 IPR001313 GO:0003723
Lan3g1189 529 SMART pum_5 318 353 IPR001313 GO:0003723
Lan3g1189 529 SMART pum_5 464 499 IPR001313 GO:0003723
Lan3g1189 529 CDD Pumilio 207 520 IPR033712 GO:0003723
Lan3g1189 529 ProSiteProfiles Pumilio RNA-binding repeat profile. 242 278 IPR001313 GO:0003723
Lan3g1189 529 SUPERFAMILY ARM repeat 201 520 IPR016024 -
Lan3g1189 529 ProSiteProfiles Pumilio RNA-binding repeat profile. 353 389 IPR001313 GO:0003723
Lan3g1189 529 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 86 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1189 Lan-Chr3 24160623 24164170 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1189 - - lang:109343871 1033.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan14g0887 14 15472593 15475955 Lan3g1189 3 24160623 24164170 LSH