Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0887 ATGTCGTTTCCACCACTTTCTTCTTCTTCCCTCGTGTTCAATGAACACGGTTCTCGTTTTTCTTCATCTTCATCACAAAATCAAAACCCCTTTCATAACCAAACCGATCATCCTTTAGAAGATGTTTTTTCTCTTCTCTCTCTCTCTCCTTTCGATTTCAGTTACTCACCTTCAATCGGTGATGGGTTTTCTACTCTTAACGGCTCACTAAATAATCATTCTTTTGAAAACCCCACTTTTCGTACTCCTCAAAGGTCTAATCTTTATGATCAAACCCATGATAACAATGCTGTTATTGGTGGTGGGTTACCTTTGTTGCATAATTGTTTGGCTGAGTACTATACTGAAAGAGGATGTATGAACTTGAACAACCGTTCGTGCGGTTCCTATGCTGCATCTACTTCTAGTGGTAGTTCTTCAAGAAACAATAATGGGTTTCTTGATTCTGAGGCTTTTGTGAGAGAAACAGGTTTTGGAGGGATTCTTGTGGATGATCAGTTTATGTTGGGTAATAGGCTTAATTTGAATAATGGAATGAGTAATCAGCATTGCTTGAATAATCTGAGAGGGAGGGTTGTGTTATTAGCCAAGGATCAAAGTGGACGCAGATTATTGATATCAATAATGAAAAGATTGAAAGTGACAAGCAATGAGACTTCTTTCATTTTCTTGGAGCTGCTTGATCATGTTGCTGAGTTGATGGTTGATCCCTTTGGGAATTATGTTATTCAGAAGTTGGTGGAAATTTGCACTGAAGAACAAAGGGCTATCATCATTTTGAAATTGATCCAGTCTAATCTGATGCTAGTCAGAATTTGTCTTAACACATATGGAACCCGATCTGTGGAGAAATTGTTAGAGAATATTACCTCTCAGCAGCAACGGTCACTTGTTCTGTCAGCTCTAAGCCCTGGTGCTGCTGTATTGGCCGTAGATGCAAATGGTCATCGTGTGCTCTTGCATTGTCTCAAAAATTTCTCACCAGAAGATAATAAGTGTCTTCTGAGAGTGGTGGCAAACCACTGTTTTAGGATTGCAACAGATAAGACTGGGTGTTGTGTGCTGAAGGAATGTGTTAATTATGCTCATGGAGAAACCAAGAAGAGGTTGATTTCTGAGATCATAGTAAATGCTCCACTCTTAGCAGAAGATGCTTACGGCAACTATGTCTTGCAACACTTAGTGTCTCCAAAAACACCAATAGTTACAGAATGTCTACTGAGACACCTTGAAGGGAAATTCTTATCTCTTTCCCGCAATAAGTATGGGAGTAATGTTGTGGAGAAGTTCTTTGAAGAAGCTGGGGACCAGCATAGAATACGTATCGTCTTGGAGTTGCTTCGCGATCCAGATTTTGCAAGGCTTCTAGTTGATCCATTTGGAAATTATGTCATCCGGTCCGCAATCTTGGGATCCAAGGGTGAGATTCAAGATACTCTGTTGCAGCTTATCCAAATTAACTCTCCAGTGATGCAAACCAATGTCTATGGCAGGAAGTTGCTAGAGAAGTTTGGGAGTGGAAGACTAAGGCGTTCAAAAACATCTATTATTTAA 1554 0.399 MSFPPLSSSSLVFNEHGSRFSSSSSQNQNPFHNQTDHPLEDVFSLLSLSPFDFSYSPSIGDGFSTLNGSLNNHSFENPTFRTPQRSNLYDQTHDNNAVIGGGLPLLHNCLAEYYTERGCMNLNNRSCGSYAASTSSGSSSRNNNGFLDSEAFVRETGFGGILVDDQFMLGNRLNLNNGMSNQHCLNNLRGRVVLLAKDQSGRRLLISIMKRLKVTSNETSFIFLELLDHVAELMVDPFGNYVIQKLVEICTEEQRAIIILKLIQSNLMLVRICLNTYGTRSVEKLLENITSQQQRSLVLSALSPGAAVLAVDANGHRVLLHCLKNFSPEDNKCLLRVVANHCFRIATDKTGCCVLKECVNYAHGETKKRLISEIIVNAPLLAEDAYGNYVLQHLVSPKTPIVTECLLRHLEGKFLSLSRNKYGSNVVEKFFEEAGDQHRIRIVLELLRDPDFARLLVDPFGNYVIRSAILGSKGEIQDTLLQLIQINSPVMQTNVYGRKLLEKFGSGRLRRSKTSII* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0887 517 ProSiteProfiles Pumilio RNA-binding repeat profile. 446 482 IPR001313 GO:0003723
Lan14g0887 517 ProSiteProfiles Pumilio RNA-binding repeat profile. 336 372 IPR001313 GO:0003723
Lan14g0887 517 MobiDBLite consensus disorder prediction 17 36 - -
Lan14g0887 517 CDD Pumilio 190 503 IPR033712 GO:0003723
Lan14g0887 517 Pfam Pumilio-family RNA binding repeat 270 298 IPR001313 GO:0003723
Lan14g0887 517 Pfam Pumilio-family RNA binding repeat 381 394 IPR001313 GO:0003723
Lan14g0887 517 Pfam Pumilio-family RNA binding repeat 414 447 IPR001313 GO:0003723
Lan14g0887 517 Pfam Pumilio-family RNA binding repeat 229 262 IPR001313 GO:0003723
Lan14g0887 517 Pfam Pumilio-family RNA binding repeat 309 337 IPR001313 GO:0003723
Lan14g0887 517 Pfam Pumilio-family RNA binding repeat 341 375 IPR001313 GO:0003723
Lan14g0887 517 ProSiteProfiles Pumilio RNA-binding repeat profile. 262 300 IPR001313 GO:0003723
Lan14g0887 517 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 164 508 IPR033133 GO:0003723
Lan14g0887 517 SUPERFAMILY ARM repeat 184 503 IPR016024 -
Lan14g0887 517 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 29 503 - -
Lan14g0887 517 MobiDBLite consensus disorder prediction 17 35 - -
Lan14g0887 517 PANTHER PUMILIO HOMOLOG 15 29 503 - -
Lan14g0887 517 Gene3D - 172 509 IPR011989 -
Lan14g0887 517 ProSiteProfiles Pumilio RNA-binding repeat profile. 225 261 IPR001313 GO:0003723
Lan14g0887 517 ProSiteProfiles Pumilio RNA-binding repeat profile. 409 445 IPR001313 GO:0003723
Lan14g0887 517 SMART pum_5 409 444 IPR001313 GO:0003723
Lan14g0887 517 SMART pum_5 373 408 IPR001313 GO:0003723
Lan14g0887 517 SMART pum_5 447 482 IPR001313 GO:0003723
Lan14g0887 517 SMART pum_5 264 299 IPR001313 GO:0003723
Lan14g0887 517 SMART pum_5 225 260 IPR001313 GO:0003723
Lan14g0887 517 SMART pum_5 301 336 IPR001313 GO:0003723
Lan14g0887 517 SMART pum_5 337 372 IPR001313 GO:0003723
Lan14g0887 517 ProSiteProfiles Pumilio RNA-binding repeat profile. 373 408 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0887 Lan-Chr14 15472593 15475955 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0887 - - lang:109343871 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan14g0887 14 15472593 15475955 Lan14g0887 14 15472593 15475955 ECH
Lan14g0887 14 15472593 15475955 Lan3g1189 3 24160623 24164170 LSH