Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1152 ATGGAACGTGCTCGTAGACTCGCGAACAGGGCGATTCTGAAGCGCCTTGTTTCCGAGACAAAGCAGAATCGCCATAAGGATTCTCTGTTGAATTCATCAACACCTGTTTTGTACACCCAATCCAAATGCATTTCATCAATTCCCTCTTCCTCTGTTTTCAGAAACAGGGGATCCAAAACAGAGAACTTTCTTTCAAGAAATGTTGGTTCTTCATCTCAAACTCGGTCCATTTCTGTTGAGGCACTGAAACCAAGTGACACATTCCCTCGTAGACACAACTCAGCCACACCAGAAGAACAGAGCAAGATGGCTAACACAATTGGCTTTGACAACCTTGACTCACTCATAGATGCAACTGTGCCGAAATCGATACGTTTGAGCAAGATGAAGTTCGACAAGTTCGATGAAGGGTTAACGGAGGGTCAGATGTTGGAGCATATGAATTATTTAGCTTCAAAGAATAAAGCTTTCAAATCATTCATTGGTATGGGATACTATAACACACATGTTCCACCAGTTATATTGAGGAACATATTGGAAAACCCTGCTTGGTACACTCAGTACACTCCTTATCAGGCTGAGATATCTCAAGGGCGTCTTGAATCGTTGCTGAATTATCAAACCGTGATCACTGATCTCACTGGTTTGCCTATGTCAAATGCTTCATTGCTTGATGAAGGAACTGCTGCAGCTGAAGCAATGTCTATGTGTAATAACATTCTGAAGGGAAAGAAGAAAACTTTTATCATTGCCTCTAACTGTCATCCACAAACCATCGATATTTGTAAGACTAGAGCTGCTGGTTTTAATCTTAAGGTAGTTACCGAAGATCTTAAGGATATTGATTACAAATCCGGTGATGTTTGTGGTGTTCTTGTTCAGTATCCGGGTACTGAGGGCGAGGTTTTGGATTACGGGGAGTTTATTAAGAAGGCTCATGCTAGTGGAGTTAAGGTTGTTATGGCAACTGATTTGTTGGCATTGACTGTGCTGAAACCTCCTGGTGAATTCGGGGCAGATATTGTTGTTGGTTCTGCTCAGAGGTTTGGGGTTCCAATGGGTTATGGAGGTCCTCATGCTGCGTTCCTCGCCACATCTCAAGAGTATAAGAGGATGATGCCTGGAAGAATTATTGGTCTTAGTGTTGATTCTTCTGGAAAGACTGCGTTGCGGATGGCCATGCAAACTCGAGAGCAGCATATTCGTAGGGACAAGGCTACCAGCAACATTTGCACTGCTCAGGCACTGCTTGCAAACATGGCTGCTATGTATGCTGTGTATCATGGACCTGAAGGCCTTAAAATCATTGCGGAAAGGGTTCATGGTCTTGCTGGGGTGTTTGCCCTAGGATTGAAGAAGCTTGGAAATGTGGAAGTTCCGGATCTTCCCTTCTTTGACACTGTGAAGGTTAAGACTTCCAATGCCCATGCGATTGCTGATGCTGCTCGCAAAAGTGAAATTAATTTGCGAGTTGTCGATGGGAACACTATCACTGTTGCCTTTGATGAAACCACCACCTTGGAAGATGTTGATGAGCTTTTCAAAGTTTTTGCTGGTGGAAAGCCTGTTTCCTTCACTGCTGCATCCCTTGCACCAGAGTTTCAGACTGCACTTCCTTCCGGACTTATTAGGAAGAGCCCTTATTTGACACACCCGATCTTTAACACGTACCACACTGAGCATGAGTTGCTTAGGTACATTCATAGGCTGGAATCGAAAGATCTCTCGCTGTGTCACAGTATGATACCGTTGGGATCTTGTACAATGAAGTTGAATGCAACAACTGAAATGATGCCAGTTACATGGCCTAGCTTTGCAGCCATTCACCCTTTTGCACCAATTGAACAGGCTGAAGGTTATCAGGAAATGTTCCATAATATGGGTAACCTGCTGTGTACCATCACTGGTTTTGACTCCTTCTCTCTGCAACCTAATGCTGGTGCTTCTGGAGAATATGCCGGGTTGATGGTTATTCGTGCATATCATAAGGCAAGAGGCGATCACCACCGCAATGTTTGCATCATACCTGTTTCTGCGCACGGTACAAATCCTGCTAGTGCTGCTATGTGTGGAATGAAAATTGTAACTATTGGAACCGATGCCAAGGGAAACATTAATATTGAAGAGTTGAGGAAGGCTGCTGAAACAAATAAGGACAACTTATCTGCATTTATGGTTACATATCCTTCAACACATGGTGTTTATGAAGAGGGTATTGATGAGATATGCAAGATCATTCACGATAATGGAGGCCAAGTATACATGGATGGGGCTAACATGAATGCACAGGTGGGACTTACAAGCCCAGGTTGGATCGGAGCCGATGTCTGTCATCTGAATCTCCATAAGACATTTTGCATCCCTCATGGAGGAGGTGGCCCTGGCATGGGTCCTATTGGTGTAAAGAAGCACTTGGCGCCATTTCTACCTTCACATCCGGTGATTGCTACTGGGGGCATTCCTGCACCTGAGGAATCTCAGCCACTTGGTACAATTTCTGCTGCACCATGGGGCTCAGCACTGATATTGCCGATCTCTTACGCGTATATAGCCATGATGGGTTCAAAAGGACTCACTGAAGCATCAAAGATAGCCATTTTGAATGCAAATTACATGGCAAAACGATTGGAGAATCATTACCCTGTTCTTTTCCGGGGAGTCAACGGAACATGTGCTCATGAATTCATTATTGACTTAAGAGGCTTTAAGAATACTGCTGGTATAGAACCCGAAGATGTCGCGAAGCGCCTTATCGACTACGGGTTTCATGGACCAACAATGTCATGGCCTGTGCCTGGCACACTCATGATTGAGCCTACTGAAAGTGAAAGCAAGGCTGAGTTAGACAGGTTTTGTGATGCACTTATTTCCATCCGAGAAGAAATTGCTGAGATTGAGAAAGGAAAAGCTGACATCAACAACAATGTACTCAAGGGAGCACCTCACCCACCATCACTTCTGATGGGAGATGCATGGACAAAACCATACACTCGAGATTATGCAGCCTTCCCTGCTTCGTGGCTCCGTGTTTCTAAGTTCTGGCCTACCACAGGACGTGTGGATAATGTGTATGGTGACCGCAACCTGATATGCACCCTTCAACAAACATCACAAGTTGTAGAAGAACAAGCTGCAGCTACAGCCTAA 3147 0.4455 MERARRLANRAILKRLVSETKQNRHKDSLLNSSTPVLYTQSKCISSIPSSSVFRNRGSKTENFLSRNVGSSSQTRSISVEALKPSDTFPRRHNSATPEEQSKMANTIGFDNLDSLIDATVPKSIRLSKMKFDKFDEGLTEGQMLEHMNYLASKNKAFKSFIGMGYYNTHVPPVILRNILENPAWYTQYTPYQAEISQGRLESLLNYQTVITDLTGLPMSNASLLDEGTAAAEAMSMCNNILKGKKKTFIIASNCHPQTIDICKTRAAGFNLKVVTEDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGEFIKKAHASGVKVVMATDLLALTVLKPPGEFGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGLSVDSSGKTALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKIIAERVHGLAGVFALGLKKLGNVEVPDLPFFDTVKVKTSNAHAIADAARKSEINLRVVDGNTITVAFDETTTLEDVDELFKVFAGGKPVSFTAASLAPEFQTALPSGLIRKSPYLTHPIFNTYHTEHELLRYIHRLESKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFAAIHPFAPIEQAEGYQEMFHNMGNLLCTITGFDSFSLQPNAGASGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPASAAMCGMKIVTIGTDAKGNINIEELRKAAETNKDNLSAFMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVIATGGIPAPEESQPLGTISAAPWGSALILPISYAYIAMMGSKGLTEASKIAILNANYMAKRLENHYPVLFRGVNGTCAHEFIIDLRGFKNTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAEIEKGKADINNNVLKGAPHPPSLLMGDAWTKPYTRDYAAFPASWLRVSKFWPTTGRVDNVYGDRNLICTLQQTSQVVEEQAAATA* 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1152 1048 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 82 1039 IPR003437 GO:0004375|GO:0006544
Lan3g1152 1048 Gene3D - 171 431 IPR015421 GO:0003824
Lan3g1152 1048 Gene3D - 599 850 IPR015421 GO:0003824
Lan3g1152 1048 Gene3D Aspartate Aminotransferase, domain 1 160 513 IPR015422 GO:0003824
Lan3g1152 1048 CDD GDC-P 140 517 IPR020581 GO:0004375|GO:0006546
Lan3g1152 1048 Gene3D Aspartate Aminotransferase, domain 1 851 986 IPR015422 GO:0003824
Lan3g1152 1048 SUPERFAMILY PLP-dependent transferases 91 517 IPR015424 -
Lan3g1152 1048 PANTHER GLYCINE CLEAVAGE SYSTEM P PROTEIN 1 1048 - -
Lan3g1152 1048 TIGRFAM gcvP: glycine dehydrogenase 91 1032 IPR003437 GO:0004375|GO:0006544
Lan3g1152 1048 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 1 1048 IPR020581 GO:0004375|GO:0006546
Lan3g1152 1048 SUPERFAMILY PLP-dependent transferases 552 1033 IPR015424 -
Lan3g1152 1048 CDD GDC-P 560 955 IPR020581 GO:0004375|GO:0006546
Lan3g1152 1048 Pfam Glycine cleavage system P-protein 536 810 IPR020581 GO:0004375|GO:0006546
Lan3g1152 1048 Pfam Glycine cleavage system P-protein 91 517 IPR020581 GO:0004375|GO:0006546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1152 Lan-Chr3 23802803 23810984 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1152 K00281 - gmx:100777528 1872.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan14g0861 14 15283724 15289851 Lan3g1152 3 23802803 23810984 LSH
Lan3g1152 3 23802803 23810984 Lan14g0861 14 15283724 15289851 PCT
Lan3g1152 3 23802803 23810984 Lan3g1152 3 23802803 23810984 PCT
Lan14g0861 14 15283724 15289851 Lan3g1152 3 23802803 23810984 PCT