Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1130 ATGGGTATTGAAAGAGCACATTGGGCCATAATTGTAGTATGGCTTACTTTATTTGGAGAAAAATTGATGCTTGTTAATGGTAACTTTAATTATAAGGAAGCTCTAACCAAGTCCATTATTTTCTTAGAGGCACAACGATCAGGGAAGCTTCCTTCTAATAACAGGGTCCCTTGGAGAGGAGACTCAGCACTTGATGATGGAAAACTTGCTAATGTGGATCTTTCTGGGGGATACTATGATGCAGGAGATAATGTAAAGTATGGTCTCCCAATGGCATTCACTGTTACTACTCTATCATGGGCTGCACTTTTCTACAAGCAAGAATTACAAGCTGCAAAGGAATTGGGACATGTTCAAGATGCAATCAAATGGGGTACTGATTATTTTCTGAAATGCAGCCAATCTCAAAAATTATATGTTGAGGTAGGGGACCCAAATGAGGATCACAAATGTTGGGTTAGACCAGAAAAAATGAAAACAAAAAGAACAGTTTTGATGATTGATAATAAAACCCCTGGGACTGAGATTGCAGCTGAAACTGCAGCAGCAATGGCTGCTGCTTCTATTGTCTTTAGGTCCATTGATCCCGAATACGCGCATCGTCTCCTCAACAAAGCCAAACTGCTTTTTGAATTTGCAAAATCACATAAAGGAACCTTTGATGGAGAGTGTCCCTTCTACTGCTCTTACTCTGGCTATAATGATGAACTGATGTGGGCTGCAACATGGTTATACTATGCAACAAGGAAGCCAATGTATATGAAATATATACAGGATGATGCTATAAGTGCTAGTGTATCAGAATTTAGTTGGGACCTTAAATATGCTGGAGCTCAAATCCTTCTAACCCAGTTACATTTTCAAGGACAGAAGGATCTTGAAGAATTCAAAGTCCATGGTGATAGTTTCATTTGTTCAGTGCTTCCTGATAGTCCCTACAAGCAGATTAGAATGACTCCTGCTAGCTTGGTTCATATGAGAGATGGAGCCAACATGCAATATGTGACCAGCGCAGCTTTCTTGTTCACTGTATATAGTGATTTGCTTGCCAAACATAAACAGAAAGTCACTTGTGGAGATAAACAATTCAACTCATCCCACCTCTTGGCTTTTGCTAAGAAACAAATTGATTACATACTAGGGAAAAACCCTGCAGATAGATCCTACATGGTAGGATTTGGCAAAAACCCACCAAAACAAGCTCACCATAGAGGTGCTTCAGTGCCAAGGTCAGCAAAGGATGAAGTAGCCACTTGTTCTATGAGCTTTGCAAAGTGGTTACATGTAGATTCACCTAACCCCAATGAGCTCACAGGTGCTATTGTTGGTGGACCTGACAGAAATGACAAATTTGTTGACAAACGCACTGAATCATCATATACTGAACCATGCACTTATGTTAATTCTTTAGCAATTGGACCTCTAGCAAAGCTTGCATCACTTGGTTAA 1449 0.3996 MGIERAHWAIIVVWLTLFGEKLMLVNGNFNYKEALTKSIIFLEAQRSGKLPSNNRVPWRGDSALDDGKLANVDLSGGYYDAGDNVKYGLPMAFTVTTLSWAALFYKQELQAAKELGHVQDAIKWGTDYFLKCSQSQKLYVEVGDPNEDHKCWVRPEKMKTKRTVLMIDNKTPGTEIAAETAAAMAAASIVFRSIDPEYAHRLLNKAKLLFEFAKSHKGTFDGECPFYCSYSGYNDELMWAATWLYYATRKPMYMKYIQDDAISASVSEFSWDLKYAGAQILLTQLHFQGQKDLEEFKVHGDSFICSVLPDSPYKQIRMTPASLVHMRDGANMQYVTSAAFLFTVYSDLLAKHKQKVTCGDKQFNSSHLLAFAKKQIDYILGKNPADRSYMVGFGKNPPKQAHHRGASVPRSAKDEVATCSMSFAKWLHVDSPNPNELTGAIVGGPDRNDKFVDKRTESSYTEPCTYVNSLAIGPLAKLASLG* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1130 482 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 378 404 IPR018221 -
Lan3g1130 482 PANTHER ENDO-1,4-BETA-GLUCANASE 9 479 - -
Lan3g1130 482 SUPERFAMILY Six-hairpin glycosidases 27 480 IPR008928 GO:0005975
Lan3g1130 482 Gene3D - 25 482 IPR012341 GO:0005975
Lan3g1130 482 Pfam Glycosyl hydrolase family 9 31 473 IPR001701 GO:0004553|GO:0005975
Lan3g1130 482 PANTHER ENDOGLUCANASE 16-RELATED 9 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1130 Lan-Chr3 23644217 23648041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1130 5 480 Glycoside Hydrolase AT3G43860 68.058 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1130 K01179 - gmx:100811509 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g1130 3 23644217 23648041 Lan3g1130 3 23644217 23648041 ECH
Lan15g1085 15 19828994 19831858 Lan3g1130 3 23644217 23648041 LSH