Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1024 ATGGGTGGAAGAAGAAGAAGAAAGGGTTTGAATGAAAACAAAGAGAATATGAAAAAGCGTTCAAAATCAATTGAACCTTCTTCAACTTCCACCATTGATCCTTATTCTTCTCGCTTCAATATTCAAAACCTTGCTTTCGATAACTATTACAAGGAACAACGAATCGTCACTTCTCAACAATGGGATTCATTCCTCAACCTTCTCAGAACTCCATTACCTTCATCTTTTCGAATCAATTCCAATACTCAATTTTCTCAAGATATTCGGTCCCAATTGGAGAATGATTTTGTGCATTCACTTCGGTTCCAGAGTGTTGAAGAGGATGATGTGGATCCTGTTATACCTTTGCCATGGTATCCGGAGAATTTTGCATGGCAATCGAAATTTTCGCGTATGCAGCTTAGGAAGAATCAATCACTAACGAGGTTTCATGAGTTCTTAAAGCTACAAAGTGAAATTGGAAATATTACAAGACAGGAAGCTGTCAGCATGGTTCCTCCTTTGTTCTTGGATATACATTCAAATCATTTTGTACTTGACATGTGTGCTGCACCTGGTTCAAAAACATTCCAATTGCTCGAGATTATACACAAATCAACTGAAGCAGGATCATTGCCTGATGGAATGGTTATAGCAAATGATCTAGATATTCAAAGATGTAATCTTCTCATCCACCAAGCAAAACGACTGTGCACATCAAATCTAATCGTCACTAGTCATGAAGCTCAGAACTTCCCAGGATGTTTTTTAAACAGGAATTACGATGCAATGGAGCCTGATCAAAATATCGACCAACTGTTATTCGATCGTGTTCTATGTGATGTCCCATGCAGCGGAGATGGTACCCTTCGTAAGGCACCTGAGCTCTGGAGGAAATGGAACACTGGGACAGGAAATGGGCTTCATAACCTACAAGTTCTAATTGTTGTTCGAGGCTTATCTTTACTTAAAGTTGGTGGAAGACTGGTTTATTCAACCTGCTCAATGAATCCTATTGAGAATGAAGCCGTGGTTGCAGAGGTTTTGAGGAGGTCTGGAGGATCTGTTGAACTTGTTGATGTCTCTAGTGAGCTTCCCCAACTTATTCGTCGGCCAGGTCTTAAGAAATGGAAGGTATCTGACAAGGGTTTGTGGTTGGTCTCTTGCAAAGATGTTCCCAAGTCTCATAGAACTGTAATTCTGCCTAGCATGTTTCCAGCTGGCGGTAGTTATCAGGATGCTGTCGGCATTGGAGATGATACTACTGGTGATGCTAATGGAAATTCTGAAGATGTTCAAGCAGTGGAGAATCCTGTGATGCATGAGTTTACTGAGGAAGTTTCTGATTTCCCTCTAGAGCATTGCATGAGGTTAGTGCCCCACGATCAGAACACTGGAGCCTTCTTTATTGCCGTGTTACAGAAAGTTTCTCCTCTGCCTGGGGCTAATATGAACGACAATGAACCCAATGCAGCAGATTCAGAAGTTAGCCCTGTTACCTGCGAAGAAGGGGATTCCAATGGGCCCCAAGAACCCCATGATGTAGAAAACATAGCAAAGATTACTCCAGGCAACAGAAAGTTGCAGAGTCGAGGCAAATGGAGAGGCATTGACCCTGTTGTCTTCTTCAAAGATGAAGTAATTATTAACAGCATAAAAGCATTTTATGGTATTGACGAGAAGTTTCCATTTGATGGTCATCTTGTTACACGAAACAGTGATACAAGCCATGTGAAAAGAATTTACTATGTCTCCAAGTCAGTGAAGGATGTTCTTGAGTTGAACTTCTCAGTTGGGCAGCAACTTAAAATTACTTCTGTTGGCCTGAAGATTTTTGAAAGACAAACGTCACTGGCAGGTATCTCTGCATCATGTGCTTTTCGGATATCATCTGAAGGATTGCCCCTTGTTCTCCCTCACATCACCAAACAGATTCTACGTGCGTCTCCTATAGACTTCAAACATCTTCTGCAATATAGAGCTGTAAAATTTGCAGATTTTGTTGATGCCGAGTTTGGTGAGAGAGCGGCAAACTTAATGCCAGGCTGTTGTGTCATAGTTTTGGGTGAAGGGAATAGAGCTCCTACAAAGACCCTCGAAGTGGATAAATCAACAATAGCCATTGGATGCTGGAAGGGTGGGGCGACTTTGACCCTGATGGTTACTGAACTGGATCGCCAAGAACTGCTCGAAAGGTTTTTAACGCGTTTAGACACAGAAAAGGACTCCATGCATGGGAGCAACCTTTCTGACAACACTGAAGACGATGTACTGCACTCAAACGGTAAAGATGATGTCGAAGCTAATGGGTGTTAG 2295 0.4192 MGGRRRRKGLNENKENMKKRSKSIEPSSTSTIDPYSSRFNIQNLAFDNYYKEQRIVTSQQWDSFLNLLRTPLPSSFRINSNTQFSQDIRSQLENDFVHSLRFQSVEEDDVDPVIPLPWYPENFAWQSKFSRMQLRKNQSLTRFHEFLKLQSEIGNITRQEAVSMVPPLFLDIHSNHFVLDMCAAPGSKTFQLLEIIHKSTEAGSLPDGMVIANDLDIQRCNLLIHQAKRLCTSNLIVTSHEAQNFPGCFLNRNYDAMEPDQNIDQLLFDRVLCDVPCSGDGTLRKAPELWRKWNTGTGNGLHNLQVLIVVRGLSLLKVGGRLVYSTCSMNPIENEAVVAEVLRRSGGSVELVDVSSELPQLIRRPGLKKWKVSDKGLWLVSCKDVPKSHRTVILPSMFPAGGSYQDAVGIGDDTTGDANGNSEDVQAVENPVMHEFTEEVSDFPLEHCMRLVPHDQNTGAFFIAVLQKVSPLPGANMNDNEPNAADSEVSPVTCEEGDSNGPQEPHDVENIAKITPGNRKLQSRGKWRGIDPVVFFKDEVIINSIKAFYGIDEKFPFDGHLVTRNSDTSHVKRIYYVSKSVKDVLELNFSVGQQLKITSVGLKIFERQTSLAGISASCAFRISSEGLPLVLPHITKQILRASPIDFKHLLQYRAVKFADFVDAEFGERAANLMPGCCVIVLGEGNRAPTKTLEVDKSTIAIGCWKGGATLTLMVTELDRQELLERFLTRLDTEKDSMHGSNLSDNTEDDVLHSNGKDDVEANGC* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1024 764 PRINTS RNA (C5-cytosine) methyltransferase signature 179 189 IPR023267 GO:0001510
Lan3g1024 764 PRINTS RNA (C5-cytosine) methyltransferase signature 269 281 IPR023267 GO:0001510
Lan3g1024 764 PRINTS RNA (C5-cytosine) methyltransferase signature 319 335 IPR023267 GO:0001510
Lan3g1024 764 PRINTS RNA (C5-cytosine) methyltransferase signature 451 468 IPR023267 GO:0001510
Lan3g1024 764 Pfam 16S rRNA methyltransferase RsmB/F 169 354 IPR001678 GO:0008168
Lan3g1024 764 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 35 469 IPR029063 -
Lan3g1024 764 ProSitePatterns NOL1/NOP2/sun family signature. 268 279 IPR018314 GO:0003723|GO:0008168
Lan3g1024 764 PANTHER TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED 6 474 - -
Lan3g1024 764 PANTHER TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED 475 736 - -
Lan3g1024 764 Gene3D Vaccinia Virus protein VP39 42 394 IPR029063 -
Lan3g1024 764 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 475 736 IPR023267 GO:0001510
Lan3g1024 764 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 6 474 IPR023267 GO:0001510
Lan3g1024 764 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 64 469 IPR001678 GO:0008168
Lan3g1024 764 MobiDBLite consensus disorder prediction 735 764 - -
Lan3g1024 764 MobiDBLite consensus disorder prediction 1 32 - -
Lan3g1024 764 MobiDBLite consensus disorder prediction 474 509 - -
Lan3g1024 764 MobiDBLite consensus disorder prediction 1 22 - -
Lan3g1024 764 MobiDBLite consensus disorder prediction 474 497 - -
Lan3g1024 764 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 125 146 IPR023270 GO:0016428
Lan3g1024 764 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 353 372 IPR023270 GO:0016428
Lan3g1024 764 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 595 607 IPR023270 GO:0016428
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1024 Lan-Chr3 22554643 22562212 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1024 K15334 - gmx:100808598 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0610 12 12974278 12981979 Lan3g1024 3 22554643 22562212 PCT