LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan12g0610	ATGGGAAGAGGAGGTAGGTCTCGCACTCAGAGAAAACATTTCCGTCAAAGCAGAGAAAACGTGTGGAAACGTTCTAAATCAGATCCAAATTCCAAACCAAATGATGAAAACCAAACTCAAACCAATCACACTTCGTGGACTCCATTCGCTACTGAAAACTCCTCTTTCGATCTCTACTACAAGGAACAGAACATAGTGAACGAAGAAGAATGGGAACAATTCGTCACAGTTCTCAGAACTCCTTTACCCGCTTCGTTTCGAATCAACTCCAGTACGCAGTTCGCTGATGACATTCGTTCGCAATTGGAGAATGATTTTGCACATTCTCTTCGTGATGAGGTTACTGAAGGAGGTGAAAAAGAGGCTATTAGGCCTTTGCTTTGGTATCCTGGGAATTTTGCTTGGCATTCCAATTTTTCGCGAATGCAGCTCAGGAAGAACCAAACACTTGAGAGGTTCCATGAATTCTTGAAGCTAGAAAATGAAATTGGAAATATTACAAGGCAGGAAGCTGTCAGTATGGTGCCTCCCCTCTTTTTGGATGTGCATTCAGATCATTTTGTACTTGATATGTGTGCTGCACCAGGTTCGAAAACATTCCAATTGCTTGAGATTATACACCAATCAACTAAAGCAGGATTGTTACCTGATGGAATGGTTATAGCAAATGATCTTGATGTCCAAAGATGTAATCTTCTCATCCACCAAACAAAAAGAATGTGCACAGCCAACCTAATTGTCACTAATCATGAAGCGCAGAACTTCCCAGGATGCCGTCTAAACAGGAATCACGAAAAAATCGAGCCAGATCAGCATATTAGCCAACTCTTATTTGACCGTGTTTTGTGTGATGTCCCATGCAGTGGAGATGGTACTCTTCGTAAGGCACCTGATCTTTGGAGGAAATGGAACTCAGGGATGGGACAAGGGCTTCACAGCCTACAAGTTCTAATTGCTATGCGAGGTTTATCTTTACTTAATGTTGGTGGAAGAATGGTTTATTCAACATGCTCAATGAATCCTATTGAGAATGAAGCCGTGGTTGCAGAGGTTTTGCGTAGGTGTGGAGGGTCAGTTGAACTTGTTGATGTCTCAAGTAAGCTCCCTCAACTTATTCGCCGGCCAGGTCTCAAGAGCTGGAAGGTTCATGACAAGGGCACATGGTTAGTCTCTTGCAAAGATGTGCCTAAGTACCGTAGAAGTGTAATTCTTCCTGGTATGTTTCCTTCTGGAGGAAGCTATCAGGAACTTGTTGACAACAGTAATTGTAGTGCTGACATGGGAGATAATATTAGTGTTTGTACCAATAGAAATTCTGAAGATGGTGTTCAAACAATTGAGGAACCTGTGACTCATCAGTCTGCTGAGGAAGTTTGTGATTTCCCTTTAGAGCATTGCATGAGGATAGTGCCTCATGATCAAAATACCGGAGCCTTCTTTATTGCAGTACTGCAAAAAGTTGCTCCTCTGCCAGCAACTCAAGAAAAATCTAAATCAGAAATTGTTGAGCAAAATGTAGAACCATTAAATCCAAGTCTTGAAGATGCTCAAGCACTGAAGATTAATTCATCAGAAAGTGCAATTGAAGAAGTCTGCAAAGCAGTTCCAGAGGAAATCTTAAATGACAACAAACAAAATACAGAAGATTTAGAAGTTAGTCCTGTTGAAGAACAGGATTCCAAAGAAACTGAAGAGCCTCCCATTGTAGAAAACATGGCAAAGAAGGTTCCAGCCAAAAGAAAGCTACAAATTCAAGGCAGATGGAGAGGCGTTGACCCTGTTGTCTTTTTCAAAGATGAAGCAATTATTAATAGTATAAGGGCATTTTATGGCATCGGTGAGCATTTTCCTTTGGATGGTCACCTTGTTACAAGAAACAATGATGCAAGTCATGTCAAAAGAATTTACTATGTCTCCAAGTCAGTCAAGGATGTTCTTAAGTTGAACTTCTCTGCTGGGCAGCAACTTAAAATAACTTCTGTTGGTCTGAAGATGTTTGAAAGACAATCAGCACAAGAAGGTAGTGATACTCCATGTGCTTTCCGGATATCATCTGAAGGATTGCCCCTTGTTCTCCCATACATAACCAAACAGATTTTACATGCATCTCCGGAAGACTTCAAGCGTCTTCTACAGGATAAAGATGTAAAGTTTGCAGATTTTGCTGATGCTGAGTTTGGTGAGAAGGCAGCAAACCTAATGCCAGGGTATTGTGTGGTAATTCTGAATAAAGGGAACAGATCTGCAACCGAGCCCCCCAAAGTAGATGAGTCAACGATAGCCATTGGATGCTGGAGGGGTAGGGTGAGATTGACAGTGATGGTCACTGCAATGGATTGTCAAGAACTGCTTGAAAGGCTTTTAATACGTCTAGACCCAGAAAAGGGTGCTTCAGTGAATGTGGACAAATCCTCTAATAATGTTGGAGGTGAAGTACAGCCTGTACCTGAGATCAACGGTAAAAATGATGAATGA	2475	0.4149	MGRGGRSRTQRKHFRQSRENVWKRSKSDPNSKPNDENQTQTNHTSWTPFATENSSFDLYYKEQNIVNEEEWEQFVTVLRTPLPASFRINSSTQFADDIRSQLENDFAHSLRDEVTEGGEKEAIRPLLWYPGNFAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHQSTKAGLLPDGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQNFPGCRLNRNHEKIEPDQHISQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNSGMGQGLHSLQVLIAMRGLSLLNVGGRMVYSTCSMNPIENEAVVAEVLRRCGGSVELVDVSSKLPQLIRRPGLKSWKVHDKGTWLVSCKDVPKYRRSVILPGMFPSGGSYQELVDNSNCSADMGDNISVCTNRNSEDGVQTIEEPVTHQSAEEVCDFPLEHCMRIVPHDQNTGAFFIAVLQKVAPLPATQEKSKSEIVEQNVEPLNPSLEDAQALKINSSESAIEEVCKAVPEEILNDNKQNTEDLEVSPVEEQDSKETEEPPIVENMAKKVPAKRKLQIQGRWRGVDPVVFFKDEAIINSIRAFYGIGEHFPLDGHLVTRNNDASHVKRIYYVSKSVKDVLKLNFSAGQQLKITSVGLKMFERQSAQEGSDTPCAFRISSEGLPLVLPYITKQILHASPEDFKRLLQDKDVKFADFADAEFGEKAANLMPGYCVVILNKGNRSATEPPKVDESTIAIGCWRGRVRLTVMVTAMDCQELLERLLIRLDPEKGASVNVDKSSNNVGGEVQPVPEINGKNDE*	825

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan12g0610	824	PANTHER	NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	3	799	IPR023267	GO:0001510
	Lan12g0610	824	MobiDBLite	consensus disorder prediction	799	824	-	-
	Lan12g0610	824	PRINTS	RNA (C5-cytosine) methyltransferase signature	189	199	IPR023267	GO:0001510
	Lan12g0610	824	PRINTS	RNA (C5-cytosine) methyltransferase signature	279	291	IPR023267	GO:0001510
	Lan12g0610	824	PRINTS	RNA (C5-cytosine) methyltransferase signature	329	345	IPR023267	GO:0001510
	Lan12g0610	824	PRINTS	RNA (C5-cytosine) methyltransferase signature	469	486	IPR023267	GO:0001510
	Lan12g0610	824	MobiDBLite	consensus disorder prediction	14	31	-	-
	Lan12g0610	824	MobiDBLite	consensus disorder prediction	540	565	-	-
	Lan12g0610	824	ProSitePatterns	NOL1/NOP2/sun family signature.	278	289	IPR018314	GO:0003723\|GO:0008168
	Lan12g0610	824	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	60	487	IPR029063	-
	Lan12g0610	824	ProSiteProfiles	SAM-dependent MTase RsmB/NOP-type domain profile.	74	487	IPR001678	GO:0008168
	Lan12g0610	824	MobiDBLite	consensus disorder prediction	32	49	-	-
	Lan12g0610	824	Pfam	16S rRNA methyltransferase RsmB/F	179	363	IPR001678	GO:0008168
	Lan12g0610	824	Gene3D	Vaccinia Virus protein VP39	52	397	IPR029063	-
	Lan12g0610	824	PANTHER	TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED	3	799	-	-
	Lan12g0610	824	MobiDBLite	consensus disorder prediction	1	49	-	-
	Lan12g0610	824	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	135	156	IPR023270	GO:0016428
	Lan12g0610	824	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	363	382	IPR023270	GO:0016428
	Lan12g0610	824	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	656	668	IPR023270	GO:0016428

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan12g0610	Lan-Chr12	12974278	12981979	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan12g0610	K15334		-	gmx:100808859	1280.39

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan12g0610	12	12974278	12981979	Lan3g1024	3	22554643	22562212	PCT