Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0980 ATGGAGATTATCAACTCCATTCTTACCAATGCCAAATATTCTTCTATCTTCTTAGCCATTTTTGCTCTCTTAGCTGCATTGTCTTCAGCAAACCCAAAAACTCACCATCATGAGTTTGTTGTTGAAGCAACTCCAGTGAAGAGGCTGTGCAAAACCCACAACACAATCACAGTGAATGGGCAATATCCAGGTCCAACGTTGGAAATCAACAATGGAGACACTTTGGTTGTCAAAGTCACTAACAAAGCTCGTTACAATGTGACCATTCATTGGCATGGTATTCGACAAATGAGAACAGGTTGGGCAGATGGACCAGAATTTGTGACACAATGTCCCATTCGTCCTAAAGAGAGTTACACATATAAGTTCAGTGTTGTAGGACAAGAAGGTACACTTTGGTGGCATGCTCATAGTTCATGGTTAAGGGCTACTGTTTATGGAGCTTTAATCATTCGTCCTAGGGAAGGACACTCCTACCCTTTCCCTAAGCCAAATCGTGAGACACCAATTCTCCTAGGGGAATGGTGGGACACAAACCCCATTGATGTAATAAGAGAGGCCACAAGAACAGGAGCAGCTCCAAATGTGTCTGATGCATACACCATTAATGGTCAACCTGGTGATCTTTACAAGTGTTCTAGCAAAGGCACAACAATTATTCCAATAGATTCCGGTGAGACCAACCTCCTCCGAGTTATAAACTCAGCACTTAACCAACCACTCTTTTTCACCATTGCCAACCACAAACTCACCGTGGTCGGCGCCGATGCTTCATACCTTAAACCCTTCACCACCACCGTCCTCGTGCTAGGACCTGGTCAAACCACTGATGTTCTAATCAGTGGTGACAATCCACCTTCCCTTTACTACATTGCTTCACGTGCTTATCAATCTGCCCAAAACGCTGCGTTTGATAATACCACTACTACTGCAATTCTTCAATACAAATCAACTCATCATGGTTTGAATGGTAGAAAACCATTAATGCCACTACTTCCTGCTTATAATGACACTAATACAGTTACTGCTTTTAGTAGAAGTTTCAGAAGTCCAAGAAAAGTTGAGGTACCCACTGAGATTGATGAGAACCTCTTCTTCACTGTGGGACTAGGACTTAACAAGTGCCCTCCAAATTTTAGGGCAAGGAGGTGCCAAGGACCCAATGGGACACGCTTCACAGCAAGCATCAACAATGTATCTTTTGTACTCCCTAACAACATTTCCATTTTACAAGCCCACCATTATGGAATTCCAGGAGTCTTCACCACTGATTTTCCGGCCAAACCACCGTTGAAATTCGACTACACCGGTAACGTAAGCCGCTCCCTATGGCAACCTATTCCGGGGACTAAAGCTTACAAGTTGAAGTTTGGATCAAGGGTGCAAATTGTGTTGCAAGATACAAGTATAGTCACTTCTGAGAACCACCCAATTCATCTTCATGGCTATGATTTCTATATTGTTGCTGAGGGGTTTGGAAACTTTAATGCTAAGAAAGATAGTTCTAAATTCAACCTTGTTGATCCACCTCTAAGGAACACAGTAGCTGTGCCTGTGAATGGTTGGGCTGTTATTCGGTTTGTTGCTGATAATCCAGGTGCCTGGCTTTTACACTGTCACTTGGATGTTCACATTAAATGGGGTTTGGCCACAGTGCTATTGGTAGAAAATGGTGTTGGGAAATTTCAATCCATAGAGCCTCCTCCAAAGGATTTACCTCTATGTTAA 1728 0.43 MEIINSILTNAKYSSIFLAIFALLAALSSANPKTHHHEFVVEATPVKRLCKTHNTITVNGQYPGPTLEINNGDTLVVKVTNKARYNVTIHWHGIRQMRTGWADGPEFVTQCPIRPKESYTYKFSVVGQEGTLWWHAHSSWLRATVYGALIIRPREGHSYPFPKPNRETPILLGEWWDTNPIDVIREATRTGAAPNVSDAYTINGQPGDLYKCSSKGTTIIPIDSGETNLLRVINSALNQPLFFTIANHKLTVVGADASYLKPFTTTVLVLGPGQTTDVLISGDNPPSLYYIASRAYQSAQNAAFDNTTTTAILQYKSTHHGLNGRKPLMPLLPAYNDTNTVTAFSRSFRSPRKVEVPTEIDENLFFTVGLGLNKCPPNFRARRCQGPNGTRFTASINNVSFVLPNNISILQAHHYGIPGVFTTDFPAKPPLKFDYTGNVSRSLWQPIPGTKAYKLKFGSRVQIVLQDTSIVTSENHPIHLHGYDFYIVAEGFGNFNAKKDSSKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGAWLLHCHLDVHIKWGLATVLLVENGVGKFQSIEPPPKDLPLC* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0980 575 CDD CuRO_2_LCC_plant 169 315 IPR034285 -
Lan3g0980 575 ProSitePatterns Multicopper oxidases signature 1. 533 553 IPR033138 -
Lan3g0980 575 Pfam Multicopper oxidase 425 557 IPR011706 GO:0005507|GO:0016491
Lan3g0980 575 SUPERFAMILY Cupredoxins 357 575 IPR008972 -
Lan3g0980 575 CDD CuRO_3_LCC_plant 420 558 IPR034289 GO:0005507
Lan3g0980 575 Gene3D - 22 153 IPR008972 -
Lan3g0980 575 SUPERFAMILY Cupredoxins 161 351 IPR008972 -
Lan3g0980 575 Pfam Multicopper oxidase 41 155 IPR011707 GO:0005507
Lan3g0980 575 PANTHER LACCASE 11 575 - -
Lan3g0980 575 Gene3D - 379 575 IPR008972 -
Lan3g0980 575 PANTHER MULTI-COPPER OXIDASE 11 575 IPR045087 -
Lan3g0980 575 SUPERFAMILY Cupredoxins 31 180 IPR008972 -
Lan3g0980 575 ProSitePatterns Multicopper oxidases signature 2. 538 549 IPR002355 GO:0005507
Lan3g0980 575 CDD CuRO_1_LCC_plant 37 153 IPR034288 GO:0005507
Lan3g0980 575 TIGRFAM laccase: laccase 33 575 IPR017761 GO:0046274|GO:0048046|GO:0052716
Lan3g0980 575 Pfam Multicopper oxidase 167 317 IPR001117 -
Lan3g0980 575 Gene3D - 165 353 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0980 Lan-Chr3 21491103 21497751 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0980 K05909 - gmx:100808948 1028.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g0980 3 21491103 21497751 Lan2g1159 2 22830077 22833352 PCT
Lan3g0980 3 21491103 21497751 Lan11g0226 11 1432132 1435363 PCT
Lan2g1159 2 22830077 22833352 Lan3g0980 3 21491103 21497751 PCT
Lan11g0226 11 1432132 1435363 Lan3g0980 3 21491103 21497751 PCT