Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0226 ATGGAAGGTCTCAACACCTTTTTAGCCATTTTTGTTCTCCTAGCTTTAGCATTGTCTTTAGCAAATGCCAAAACTCAAGAGCATGAGTTTGTTGTTCAAGCAACTCCAGTGAAGAGGTTGTGCAACACCCACAGTGCCATAACTGTGAATGGACAATTCCCTGGACCAACATTGGAGGTCAACAATGGAGACACTTTGATCGTCAAAGTCATTAATAGAGCACGTTATAATGTCACCATTCACTGGCATGGTATTCGGCAAATTAGAACAGGATGGGCTGATGGACCAGAATTTGTGACTCAATGTCCAATTCGTCCAGGAGAAAGTTACACATATCGGTTTACAATTGAAGGACAAGAAGGCACACTTTGGTGGCACGCTCATAGCTCATGGTTAAGAGCCACTGTTTATGGAGCTTTAATCATTCATCCCAAGCAAGGAGAGTCCTACCCTTTCACTAACCCAAAACGCGAGACACCCATTCTTCTAGGGGAATGGTGGGATGCAAATCCAATAGATGTTGTTAGACAGGCCACACAAACAGGAGGAGCACCAAATGTGTCTGATGCATACACTATCAATGGTCAACCTGGTGATCTTTATAAGTGCTCTACCCAAGGCACCACAATTGTTCCAATAGATTCAGGAGAGACCAACCTCCTTCGTGTAATCAATGCTGCACTCAATCAACCACTTTTCTTCACAATTGCAAACCACAAATTCACAGTGGTTGGTGCTGATGCCTCATACCTGAAACCTTTCACCACCACAGTTCTAATGCTAGGTCCTGGCCAAACCACTGATATTCTCATCAAAGGTGACCAACCACCTTCAAGGTACTATATTGCAGCACGTGCTTACCAATCAGCCCAAAATGCTGGATTTGATAACACCACTACCACAGCCATTCTTGAATATAAATCAGCACCATGTCCTTCTAAGGGTGTAGCCACAATTAAACCACTTATGCCATCTCTACCTGCTTATAATGACACTAACACTGTCACTGCCTTCAGCAAAAGCCTTAGAAGCCCAAGAAGAGTTGAGGTTCCTACAGAAATAGATGAGAATCTTTTCTTCACTATTGGCTTAGGACTTAACAATTGTCCACCAAATTTCAACTCAAACCAATGCCAAGGTCCTAATGGAACAAGGTTCACTGCTAGCATGAACAATGTGTCTTTTGTTCTCCCAAGCAATATTTCAATCCTGCAGGCTCAACACCTTGGAGTTCAAGGAGTGTTCACCACTGATTTTCCCACAAATCCTCCTCTGCAATTCGATTACACGGGTAATGTGAGCCGTTCGTTGTGGCAACCGATTTCGGGGACTAAAGTGACTAAGTTGAAGTTTGGATCAAGGGTGCAGATTGTGTTGCAGGACACAAGCATTGTTACCTCAGAGAACCACCCTATTCATCTTCATGGCTATGATTTCTATGTTGTAGCTGAGGGATTTGGAAACTTTGACCCCAAGAAAGATACTTCAAAATTCAACCTTGTTGATCCACCTCAAAGGAACACAGTAGCAGTACCTGTAAATGGATGGTCAGTTATAAGATTTGTTGCTGATAACCCAGGTGCCTGGATTATGCATTGTCACTTAGATGTTCACATTGGATGGGGTTTGGCCACAGTGCTCTTAGTAGATAATGGCATTGGACTATTGGAATCCATAGAGGCCCCTCCAGAGGACCTACCTCTATGTTAA 1710 0.4327 MEGLNTFLAIFVLLALALSLANAKTQEHEFVVQATPVKRLCNTHSAITVNGQFPGPTLEVNNGDTLIVKVINRARYNVTIHWHGIRQIRTGWADGPEFVTQCPIRPGESYTYRFTIEGQEGTLWWHAHSSWLRATVYGALIIHPKQGESYPFTNPKRETPILLGEWWDANPIDVVRQATQTGGAPNVSDAYTINGQPGDLYKCSTQGTTIVPIDSGETNLLRVINAALNQPLFFTIANHKFTVVGADASYLKPFTTTVLMLGPGQTTDILIKGDQPPSRYYIAARAYQSAQNAGFDNTTTTAILEYKSAPCPSKGVATIKPLMPSLPAYNDTNTVTAFSKSLRSPRRVEVPTEIDENLFFTIGLGLNNCPPNFNSNQCQGPNGTRFTASMNNVSFVLPSNISILQAQHLGVQGVFTTDFPTNPPLQFDYTGNVSRSLWQPISGTKVTKLKFGSRVQIVLQDTSIVTSENHPIHLHGYDFYVVAEGFGNFDPKKDTSKFNLVDPPQRNTVAVPVNGWSVIRFVADNPGAWIMHCHLDVHIGWGLATVLLVDNGIGLLESIEAPPEDLPLC* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0226 569 CDD CuRO_1_LCC_plant 28 144 IPR034288 GO:0005507
Lan11g0226 569 ProSitePatterns Multicopper oxidases signature 2. 532 543 IPR002355 GO:0005507
Lan11g0226 569 CDD CuRO_2_LCC_plant 160 306 IPR034285 -
Lan11g0226 569 Gene3D - 372 569 IPR008972 -
Lan11g0226 569 SUPERFAMILY Cupredoxins 351 569 IPR008972 -
Lan11g0226 569 Pfam Multicopper oxidase 32 146 IPR011707 GO:0005507
Lan11g0226 569 Pfam Multicopper oxidase 158 308 IPR001117 -
Lan11g0226 569 ProSitePatterns Multicopper oxidases signature 1. 527 547 IPR033138 -
Lan11g0226 569 Gene3D - 15 144 IPR008972 -
Lan11g0226 569 PANTHER MULTI-COPPER OXIDASE 5 569 IPR045087 -
Lan11g0226 569 TIGRFAM laccase: laccase 23 569 IPR017761 GO:0046274|GO:0048046|GO:0052716
Lan11g0226 569 Gene3D - 156 347 IPR008972 -
Lan11g0226 569 SUPERFAMILY Cupredoxins 152 345 IPR008972 -
Lan11g0226 569 SUPERFAMILY Cupredoxins 21 171 IPR008972 -
Lan11g0226 569 CDD CuRO_3_LCC_plant 414 552 IPR034289 GO:0005507
Lan11g0226 569 Pfam Multicopper oxidase 419 551 IPR011706 GO:0005507|GO:0016491
Lan11g0226 569 PANTHER LACCASE 5 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0226 Lan-Chr11 1432132 1435363 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0226 K05909 - gmx:100796956 1066.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0226 11 1432132 1435363 Lan11g0226 11 1432132 1435363 ECH
Lan2g1159 2 22830077 22833352 Lan11g0226 11 1432132 1435363 LSH
Lan3g0980 3 21491103 21497751 Lan11g0226 11 1432132 1435363 PCT
Lan11g0226 11 1432132 1435363 Lan3g0980 3 21491103 21497751 PCT