Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0603 ATGAGTAAACTTCCGGAAAGACCATTGAATGGAGATGTAGAAGATGACGATGAAGATGAAGCTAATGATGGCCTTGAAGCCTGGGAGAGAACTTATGCAGAAGATAGATCGTGGGAGGATTTGCAAGAGGATGAATCTGGACTTCTTCGCCCCATAGATGATACAGCCATTTATCATGCCCAGTATCGCAGGCGCCTTCGTGCCCTTGCTTCCACAGCTGCTACAGCACGAATTCAGAAGGGTCTGATTCGATACCTATACGTTGTTGTTGACCTATCCAAGGCAGCTTCAGAGAGGGACTTTCGACCAAGTAGGATGGCTGTTATCGGGAGGCAGGTTGAGACATTTATCAGGGAGTTCTTTGATCAGAATCCACTTAGTCATGTTGGCCTTGTGACTATAAAAGATGGAATTGCTCATTGCTTAACAGAACTTGGCGGCAGTCCTGAGTCCCACATTAAAGCTTTGATGGGTAAACTGGAATGCTCCGGTGATGCCTCCCTACAAAATGCACTAGAGCTTGTTCTTGGTTATCTAAATCAAATTCCATCATATGGCCATCGAGAAGTTCTGATCTTATATTCAGCTCTCAGTACATGTGATCCTGGTGATCTCATGGAAACCATCCAGAAATGCAAAAAGAGTAAAATAAGGTGCTCTGTCATTGGTCTTGCTGCTGAAATGTTTATTTGCAAACATCTCTGCCAAGAAACTGGAGGAACTTATTATGTGGCACTAGATGAGACCCACTTTAAAGAGTTAATTCTTGAGCATGCACCGCCACCTCCAGCAATATCTGAGTATGCTACTGCTAATTTAATTAAGATGGGCTTTCCACAAAGAGCAGCTGAGGGTTCTGTCGCAATTTGTACATGCCACGAAGAGGCTAAAACAGGAGGGGGGTACACTTGTCCAAGATGCAAAGTTCGTGTCTGTGAGCTTCCTACTGAATGTCGCATCTGTGGATTGACCCTTATTTCTTCACCCCATTTAGCAAGGTCATATCATCATCTTTTTCCTATAGTGCCGTTTGACGAGGTCTCTCCATCATCTCAAAATGATCCACGTAACAGTTTATCGGACACTTGTTTTGGTTGTCAACAAAGTCTTCTTACCCAGGGAAGTAAGCCTGGACTTTCTGTTACTTGCCCAAAATGCAAACAACAATTCTGCCTCGACTGCGACATTTACATTCATGAGAGCTTACACAACTGCCCAGGTTGTGAGAGTTTCCAACATTCTAAGTCAGTAATTGCTGCACAATGA 1266 0.4384 MSKLPERPLNGDVEDDDEDEANDGLEAWERTYAEDRSWEDLQEDESGLLRPIDDTAIYHAQYRRRLRALASTAATARIQKGLIRYLYVVVDLSKAASERDFRPSRMAVIGRQVETFIREFFDQNPLSHVGLVTIKDGIAHCLTELGGSPESHIKALMGKLECSGDASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETGGTYYVALDETHFKELILEHAPPPPAISEYATANLIKMGFPQRAAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRICGLTLISSPHLARSYHHLFPIVPFDEVSPSSQNDPRNSLSDTCFGCQQSLLTQGSKPGLSVTCPKCKQQFCLDCDIYIHESLHNCPGCESFQHSKSVIAAQ* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0603 421 CDD vWA_transcription_factor_IIH_type 81 263 IPR007198 -
Lan3g0603 421 Gene3D von Willebrand factor, type A domain 79 264 IPR036465 -
Lan3g0603 421 SUPERFAMILY Cysteine-rich domain 336 409 IPR046349 -
Lan3g0603 421 Pfam IBR domain, a half RING-finger domain 361 405 IPR002867 -
Lan3g0603 421 PANTHER GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 18 408 - -
Lan3g0603 421 SUPERFAMILY vWA-like 81 248 IPR036465 -
Lan3g0603 421 ProSiteProfiles VWFA domain profile. 85 224 IPR002035 -
Lan3g0603 421 Pfam Ssl1-like 89 279 IPR007198 -
Lan3g0603 421 TIGRFAM ssl1: transcription factor ssl1 301 410 IPR012170 GO:0000439|GO:0006289|GO:0006351
Lan3g0603 421 PIRSF TFIIH_SSL1 3 411 IPR012170 GO:0000439|GO:0006289|GO:0006351
Lan3g0603 421 Pfam TFIIH C1-like domain 362 410 IPR004595 GO:0006281|GO:0008270
Lan3g0603 421 ProSitePatterns Zinc finger C2H2 type domain signature. 383 403 IPR013087 -
Lan3g0603 421 MobiDBLite consensus disorder prediction 1 26 - -
Lan3g0603 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 417 IPR013083 -
Lan3g0603 421 SMART C1_4_2 362 410 IPR004595 GO:0006281|GO:0008270
Lan3g0603 421 SMART VWA_4 83 259 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0603 Lan-Chr3 7119986 7124955 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0603 K03142 - gmx:100803090 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0847 10 12481036 12490152 Lan3g0603 3 7119986 7124955 LSH