Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0847 ATGAATAAAATTACGGAAAGACCACTTAATGGAGATGTAGAAGATGACGATGAAGATGAAGGTAATGACGGCCGTGAAGCCTGGGAGAGAACTTATGCAGAAGATAGATCGTGGGAGGATTTGCAAGAGGACGAATCTGGACTTCTTCGCCCCATAGATAATACAGCCATTTATCATGCCCAGTATCGCAGGCGCCTTCGTGCCCTTGCTTCCATAACTGCAACTGCACGAATTCAGAAGGGTCTTATTCGATACGTATACATTGTTGTTGATCTATCCAAGGCAGCTTCAGAGAGGGACTTTCGACCAAGTAGGATGGCTGTTATTGGGAAACAGGTTGAGACATTTATCAGGGAGTTCTTTGATCAAAATCCACTTAGTCATGTTGGTTTGATGACTATAAAAGATGGCATTGCTCATTGCTTAACAGAACTTGGCGGCAGTCCTGAATCCCACATCAAAGCTTTGATGGGTAAACTGGAATGCTCTGGTGATGCCTCCCTACAAAATGCACTAGAGCTTGTTCTTGGTTATCTAAATCAAATTCCATCATATGGTCATCGAGAAGTTCTGATCTTATATTCGGCTCTTAGTACATGTGATCCTGGTGATCTCATGGAAACCATCCAGAAATGCAAAAGGAGTAAAATAAGATGCTCTGTCATTGGTCTTGCTGCTGAAATGTTTATTTGCAAACATCTCTGCCAAGATACTGGAGGAACTTATTCTGTGGCTTTAGATGAGACCCATTTTAAAGAGTTAATTCTTGAGCATGCACCGCCACCTCCAGCAATAGCAGAGTATGCTACAGCTAATTTAATTAAGATGGGTTTTCCACAAAGAGCAGCTGAGGGTTCTGTGGCAATTTGTACATGTCACGAAGAGGCTAAAACCGGAGGGGGATACACTTGTCCAAGATGCAAAGTTCGTGTCTGTGAGCTTCCCACTGAATGTCGCATCTGTGGATTGACCCTTATTTCTTCACCCCATTTAGCAAGGTCATATCATCATCTTTTTCCTATAGTGCCGTTTGATGAGGTCTCTCCATCTCAAAATGATCCACATAACAGTTTCCCGAACACTTGTTTTGGTTGTCAACAAAGTCTTCTTTCTCAGGGAAACAAGCATGGACTTTCTGTTACTTGCCCAAAATGCAAACAACAATTCTGCCTCGATTGCGACATTTACATTCATGAGAGCTTACACAACTGCCCTGGCTGTGAGAGTTCTAGGCTTTCTAAGTCAATATCTGCTGCACAATGA 1263 0.426 MNKITERPLNGDVEDDDEDEGNDGREAWERTYAEDRSWEDLQEDESGLLRPIDNTAIYHAQYRRRLRALASITATARIQKGLIRYVYIVVDLSKAASERDFRPSRMAVIGKQVETFIREFFDQNPLSHVGLMTIKDGIAHCLTELGGSPESHIKALMGKLECSGDASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPGDLMETIQKCKRSKIRCSVIGLAAEMFICKHLCQDTGGTYSVALDETHFKELILEHAPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRICGLTLISSPHLARSYHHLFPIVPFDEVSPSQNDPHNSFPNTCFGCQQSLLSQGNKHGLSVTCPKCKQQFCLDCDIYIHESLHNCPGCESSRLSKSISAAQ* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0847 420 Gene3D von Willebrand factor, type A domain 79 264 IPR036465 -
Lan10g0847 420 SUPERFAMILY vWA-like 80 248 IPR036465 -
Lan10g0847 420 CDD vWA_transcription_factor_IIH_type 81 263 IPR007198 -
Lan10g0847 420 PANTHER GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 18 407 - -
Lan10g0847 420 ProSitePatterns Zinc finger C2H2 type domain signature. 382 402 IPR013087 -
Lan10g0847 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 416 IPR013083 -
Lan10g0847 420 ProSiteProfiles VWFA domain profile. 85 224 IPR002035 -
Lan10g0847 420 PIRSF TFIIH_SSL1 2 410 IPR012170 GO:0000439|GO:0006289|GO:0006351
Lan10g0847 420 SUPERFAMILY Cysteine-rich domain 336 408 IPR046349 -
Lan10g0847 420 SMART C1_4_2 361 409 IPR004595 GO:0006281|GO:0008270
Lan10g0847 420 Pfam Ssl1-like 89 279 IPR007198 -
Lan10g0847 420 Pfam TFIIH C1-like domain 361 409 IPR004595 GO:0006281|GO:0008270
Lan10g0847 420 SMART VWA_4 83 259 IPR002035 -
Lan10g0847 420 TIGRFAM ssl1: transcription factor ssl1 301 409 IPR012170 GO:0000439|GO:0006289|GO:0006351
Lan10g0847 420 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0847 Lan-Chr10 12481036 12490152 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0847 K03142 - gmx:100803090 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0847 10 12481036 12490152 Lan3g0603 3 7119986 7124955 LSH