Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0598 ATGTGGGCTCTTCATCGAGCTTCCTTCCCTCTCAGGAACCAAAGATATAGTGTAAGAGCTTCTTGTGTTAAATTAATGCCGACTAGTTCTGCAGAAGATGAGGTGGGTGTTGCTGAGTCTCCTCAAGTAGCATATTGTGGAAGATTTATGTTTCTGAAGAAATTTTACCATTCAGGACATGCTTCCCCGAAATTTACTGTGAGTAGGCGTGAACTTTCTTCACAAGCTGATATAAGTAGCACAAAAGACGAGGATGATTTGGAGGATGGATTTTCTGAACTGGAGACACCTGCTGCTGAAAGCGAGGATGTTGAGGAACCTCAAAATGAGCTAGAGTTATCGGATACTGAGATTGATGATTCAACTGAGAAAAAATCACATCCAGTAAAGGCCGAGTCAGAACTATTTAAGGAGATCATTAGTGCTCCTCCTCTTTCTGTTTCTTTGGTTTTGGATAAGTGGATTGAAGAAGGGAAAGAACTGAGCAGACAAGAGATCTCATTGGCCATGCTTAATCTTCGGAAGCGTAAAATGTATGGGAGAGCTTTGCAGTTGTCAGAGTGGCTCGAGTCAAATAAACAGTACGAGTTTGTTGAGAAAGATTATGCTTCTCAACTTGATTTGATTGCCAAGTTTCGTGGCATACAGAAGGCAGAGAGTTACATTGAGTCTATTCCAGAATCTTTTAGAGGGGAGGTAGTATATCGAACTTTATTGGCTAACTCTATTAGTCAGAACAATTTGAAGAAAGCAGAGGAGATTTTCAATAAAATGAAGGAATTGGAGTTTCCTCTTACACAATTTGTTTGCAACCAGTTGCTTCTTCTGTATAAGAAGAGGAATGAGAAGAAGAAAATAGCTGATGTGTTATTGTTGATGGAAAGTGAGAATATCAAACCTTCTCCTTTTACTTACAAACTCTTAATAGATGCAAAAGGTCAGTCCAATGATATTCCTGGAATGGATCTAATAGTTGAGTCAATGAAGGCTGAAGGCATTGAACCCGACATCGGAACAAAGGCAGTTTTGGTTAGGCATTACATCTCAGCCGGGCTTGAAGAAAAGGCTGAAACTGTATTAAAGGAGATGGAAGGTGAAAACTTGAAAAAGAATCGGTGGGTATGCCAATCTTTGCTTCCTCTCTATGCAATCCTTGGAAAGGCTGATGAAGTGGGAAGAATTTGGAAGATCTGTGAGTCAAACCCGCGGATTGACGAGTGTCTGGCTGCAATTGAAGCTTGGGGGAAGTTGAAAAAAATTGATGAAGCAGAGGCAGTTTTTGAGATGATATCGAAGAAATGGAAGCTTTCTTCCAAGAACTGCTCAGTGCTACTGAAGGTTTATGCAAATCATAAGATGGTAACAAAGGGCAAGGATCTTATTAAGCGAATGGCAGATAGCGGATACCGAATAGGCCCATTGACCTGGGATGCACTTGTGAAACTTCTTATCGAAGCGGGGGACGTGGAGAAGGCAGATTCTATTCTGCAGAAGGCAGTCCAACAGAGCCAGATGAAGCCATTGTTTCCTACTTACATTGCTATTTTGGAACAGTATGCAAAGAATGGTGACATCCATAATTCGGAGAAGATTTTCTATAGATTGAAACAAGCTGGTTATACTTCTCGAGCAAGACAGTACCAAGCTCTAATGCAGGCCTATGTAAATGCAAAGAAACCAGCCTATGGAATGAGGGACAGACTTAAATCTGACAAAGTATTTCCCAACAGAAGTTTGGCTAACCTGTTGGTTCAAGTTGATGGGTTCCGGAAGAATCCAGTTTCGGATTTGCTTGATTGA 1800 0.41 MWALHRASFPLRNQRYSVRASCVKLMPTSSAEDEVGVAESPQVAYCGRFMFLKKFYHSGHASPKFTVSRRELSSQADISSTKDEDDLEDGFSELETPAAESEDVEEPQNELELSDTEIDDSTEKKSHPVKAESELFKEIISAPPLSVSLVLDKWIEEGKELSRQEISLAMLNLRKRKMYGRALQLSEWLESNKQYEFVEKDYASQLDLIAKFRGIQKAESYIESIPESFRGEVVYRTLLANSISQNNLKKAEEIFNKMKELEFPLTQFVCNQLLLLYKKRNEKKKIADVLLLMESENIKPSPFTYKLLIDAKGQSNDIPGMDLIVESMKAEGIEPDIGTKAVLVRHYISAGLEEKAETVLKEMEGENLKKNRWVCQSLLPLYAILGKADEVGRIWKICESNPRIDECLAAIEAWGKLKKIDEAEAVFEMISKKWKLSSKNCSVLLKVYANHKMVTKGKDLIKRMADSGYRIGPLTWDALVKLLIEAGDVEKADSILQKAVQQSQMKPLFPTYIAILEQYAKNGDIHNSEKIFYRLKQAGYTSRARQYQALMQAYVNAKKPAYGMRDRLKSDKVFPNRSLANLLVQVDGFRKNPVSDLLD* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0598 599 SUPERFAMILY TPR-like 348 537 IPR011990 GO:0005515
Lan3g0598 599 Gene3D Tetratricopeptide repeat domain 405 594 IPR011990 GO:0005515
Lan3g0598 599 Gene3D Tetratricopeptide repeat domain 230 404 IPR011990 GO:0005515
Lan3g0598 599 MobiDBLite consensus disorder prediction 96 127 - -
Lan3g0598 599 PANTHER OS12G0527900 PROTEIN 33 599 - -
Lan3g0598 599 MobiDBLite consensus disorder prediction 96 117 - -
Lan3g0598 599 PANTHER OS01G0280400 PROTEIN 33 599 - -
Lan3g0598 599 Pfam Pentatricopeptide repeat domain 500 556 IPR002885 -
Lan3g0598 599 Pfam PPR repeat 442 468 IPR002885 -
Lan3g0598 599 Pfam Pentacotripeptide-repeat region of PRORP 239 393 IPR033443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0598 Lan-Chr3 7000248 7006530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0598 121 539 EF-hand Containing Proteins AT1G02150 25.116 1.13e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0598 - - gmx:100500196 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0852 10 12573178 12578258 Lan3g0598 3 7000248 7006530 LSH