Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0852 ATGTGGGCTCTTCGTCGAGCTTCCTTGCCTCTCAGGAACCGAGTATATAGTGTAAGAGCTTCTTGTGTCAAATTAATTCCAACTACTTATACGGAAGATGAGGCGGGTATCTCTGAGCCTCCTCAAGTAGCATATGGTGGACTTATGTCTCTGAAGAAATTTTACCACTCAGGACATGCTTCCTCAAAATTTAATGTTAGTAGACGTGAACTTTCTTCACAAGCTGATGCGAATAGCACGAAAGAGGAAGATGATCTTTTGCAGGATGGATTTTCTGAACTGGAGACACCTGCTGCTGGTGATGGAGTGGAAAATCAAAATCTATTGACTTCCGATACATATTTATCCGATGACAGTGAGGATGTTGAGGGACCACAAAATGAACTGGAGTTATCAGATACTGACATTGACGATTCAACTGAGAAAAAATCACGTAAAGGAAGGGCTGAATCAGAAATATTTAAGGAGATCAGTAATGCTAACACCCCTTCTATTTCTTCAGTTCTGGATAAGTGGCTTGAAGAAGGGAAAGAACTGAGCAGACAAGATATCTCATTGGCCATGCTTAATCTGAGGAGGCGTAAAATGTATGGGAGAGCTTTGCAGTTCTTAGAGTGGCTCGAGTCAAATAAGCAGCTGGAGTTTCTTGAGAGAGATTATGCTTCTCGACTTGATTTGATTGCCAAATCCCGTGGCCTACGGAAGGCAGAGAGTTACATTGAGACTATTCCAGAATCTTTTAGAGGGGAGGTAATATATCGAACTTTATTGGCTAACTGTATCAGTCAGAACAATTTGAAGAAAGCGGAGGAGATTTTCAATAAAATGAAGGATTTGGAGTTTCCTCTTACACAATTTGTTTGCAACCAGTTGCTTCTTCTGTATAAGAGGAATGACAAGAAGAAAATTGCTGATGTATTATTGGTGATGGAAAGTGAGAATATCAAACCTTCTCCTTTTACTTATAAAATCTTAATAGACACAAAAGGCCAGTTCAATGATATTGCTGGAATGGATCAAATTGTTGAGTCAATGAAGGCTGAAGGCATTGAACCAGACATTGGAACAAAAGCAGTTATTGTTGGGCATTACATCTCAGCTGGGTTTGAAGAAAAGGCTGAAAATGTATTAAAGGAGATGGAAGGTGAGAACTTGAAAAAGAATCGGTGGGTATGCCGATCTTTGCTTCCTCTGTATGCAAACCTGGGAAAGGCAGATGAAGTGGGAAGAATTTGGAAGGTCTGTGAGTCAAACCCGCGGGTTGAGGAGTGTCTGGCTGCAATTGAAGCTTGGGGGAAGTTGAAGAAAATTGATGAAGCAGAGGCAGTTTTTGAGATGATGTCAAAGAAATGGAAGCTTTCTTCGAAGAACTACTCAGTACTACTGAAGGTTTATGCCAATCATAAGATGGTAACAAAGGGCAAGGATCTTATTAAGCGAATGGCAGATAGTGGGTGCCGAATTGGCCCATTGACCTGGGATGCACTTGTGAAACTTCATGTCCAAGCAGGGGAAGTGGAAAAGGCAGATGCTATTCTTCAGAAGGCAATCCAACAGAACCAGGTTAAGCCAATGTTTCCTACATACTTTTCTATTTTGGAACAGTATTCAAAGCAAGGTAATGTCCATAATTCTGAAAAGATTTTCTATGGAATGAAACAAGCTGGTTATGCTTCTCGAGCAAGGCAGTACCAAGCTCTAATACAAGCCTATGTAAATGCAAAGATTCCAGCATATGGGATGAGGGACAGACTTAGAGCTGACAACATAGTTCCGAACAAGGTTTTGGCGAACCTGTTGGTGCAAGTTGATGGATTTAGGAAGAATCCACTTTCAGATTTGCTTGATTGA 1851 0.409 MWALRRASLPLRNRVYSVRASCVKLIPTTYTEDEAGISEPPQVAYGGLMSLKKFYHSGHASSKFNVSRRELSSQADANSTKEEDDLLQDGFSELETPAAGDGVENQNLLTSDTYLSDDSEDVEGPQNELELSDTDIDDSTEKKSRKGRAESEIFKEISNANTPSISSVLDKWLEEGKELSRQDISLAMLNLRRRKMYGRALQFLEWLESNKQLEFLERDYASRLDLIAKSRGLRKAESYIETIPESFRGEVIYRTLLANCISQNNLKKAEEIFNKMKDLEFPLTQFVCNQLLLLYKRNDKKKIADVLLVMESENIKPSPFTYKILIDTKGQFNDIAGMDQIVESMKAEGIEPDIGTKAVIVGHYISAGFEEKAENVLKEMEGENLKKNRWVCRSLLPLYANLGKADEVGRIWKVCESNPRVEECLAAIEAWGKLKKIDEAEAVFEMMSKKWKLSSKNYSVLLKVYANHKMVTKGKDLIKRMADSGCRIGPLTWDALVKLHVQAGEVEKADAILQKAIQQNQVKPMFPTYFSILEQYSKQGNVHNSEKIFYGMKQAGYASRARQYQALIQAYVNAKIPAYGMRDRLRADNIVPNKVLANLLVQVDGFRKNPLSDLLD* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0852 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Lan10g0852 616 PANTHER OS12G0527900 PROTEIN 26 616 - -
Lan10g0852 616 MobiDBLite consensus disorder prediction 115 149 - -
Lan10g0852 616 MobiDBLite consensus disorder prediction 65 85 - -
Lan10g0852 616 Gene3D Tetratricopeptide repeat domain 424 610 IPR011990 GO:0005515
Lan10g0852 616 Gene3D Tetratricopeptide repeat domain 248 423 IPR011990 GO:0005515
Lan10g0852 616 MobiDBLite consensus disorder prediction 116 135 - -
Lan10g0852 616 TIGRFAM PPR: pentatricopeptide repeat domain 251 282 IPR002885 -
Lan10g0852 616 TIGRFAM PPR: pentatricopeptide repeat domain 458 487 IPR002885 -
Lan10g0852 616 Pfam Pentacotripeptide-repeat region of PRORP 427 573 IPR033443 -
Lan10g0852 616 Pfam Pentacotripeptide-repeat region of PRORP 253 411 IPR033443 -
Lan10g0852 616 PANTHER OS01G0280400 PROTEIN 26 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0852 Lan-Chr10 12573178 12578258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0852 153 556 EF-hand Containing Proteins AT1G02150 25.296 2.83e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0852 - - mtr:MTR_7g089770 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0852 10 12573178 12578258 Lan3g0598 3 7000248 7006530 LSH