Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0173 ATGCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCGCAAAGATCGGAAAGAGTAAAATCTGTGGATCTGCATCCAACAGAACCATGGATTCTGGCAAGTTTGTACTCGGGGACTGTCTGTATTTGGAACTACCAATCTCAGATAATGGCCAAATCTTTTGAGGTTACAGAGTTACCAGTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGCGCAGATGATATGTTCATTCGTGTATATAATTACAACACAATGGATAAAGTCAAAGTATTTGAGGCACATACAGATTACATTAGGTGTGTGGCAGTTCACCCCACCCTTCCTTATGTGCTGTCATCATCTGATGATATGCTCATAAAACTTTGGGATTGGGAAAAAGGCTGGGTTTGTACCCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTCAATCCTAAAGATACCAACACCTTTGCCAGTGCATCTCTTGACCGCACTATAAAGATTTGGAATCTTGGCTCTCCTGACCCGAATTTTACATTGGATGCCCATCAAAAAGGAGTGAACTGCGTTGATTACTTTACAGGTGGTGACAAACCTTATCTCATCACTGGTTCTGATGATCACACTGCCAAGGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACACACAATGTGTCTGCTGTTTGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCCGAGGATGGCACAGTACGCATATGGCACTCAACAACTTATAGGCTTGAGAATACACTGAACTACAGTCTTGAAAGAGTATGGGCTATTGGATACTTGAAGGGTTCACGTCGGGTTGTGATTGGCTATGACGAAGGAACAATTATGGTCAAACTTGGTCGAGAAGTACCTGTGGCTAGCATGGACAACAGTGGGAAAATTATTTGGGCTAAGCATAATGAAATTCAGACTGTCAATATAAAGAGTGTAGGAGTAGATGTGGAGATTGCTGATGGAGAAAGATTACCTTTGGCTGTTAAGGAGTTGGGCACTTGTGATCTCTACCCACAAAATTTAAAGCACAACCCCAATGGGAGATTTGTTGTTGTATGTGGAGATGGTGAGTATATTATATACACTGCATTGGCATGGAGAAATAGGTCATTTGGTTCGGCACTGGAATTTGTTTGGTCTACGGATGGAGAATATGCTATCAGAGAAAGTACATCGAAGATTAAAATTTTCAGCAAAAGTTTCCAGGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAACGAATATTCGGTGGCACTTTGCTGGCGATGTGCTCAAATGATTTTATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAGAACCTCTACTGGGCTGATAGTGGTGATCTTGTAACAATCGCAAGTGATACATCATTCTACATTCTGAAGTACAATCGTGATGTTGTTGCATCACACTTAGATAGTGGAAGACCTGTAGATGAGGAAGGTGTTGAAGATGCTTTTGAGCTTCTTCATGAAATGAATGAACGTGTCAGGACAGGCATCTGGGTTGGGGATTGTTTTATCTACAACAATTCCTCTTGGAGACTTAATTACTGTGTTGGTGGTGAGGTAACTACGATGTTTCATCTGGACCGCCCTATGTACCTGTTGGGATATCTTGCAAACCAAAGTCGGGTCTATTTGATTGACAAAGAGTTTAATGTTATTGGATACACACTGCTTTTAAGCTTGATTGAGTACAAGACACTTGTGATGCGTGGTGATTTAGAAAGGGCAAATGAAGTTCTACCATCAATTCCTAAAGAGCATCACAACAGTGTTGCTCGTTTCCTGGAATCACGAGGGATGATAGAGGAAGCTCTTGAAGTTGCTACTGATCCAGACTACAAATTTGATTTAGCAATACAGCTCGGAAGATTAGATGTTGCAAAGGGTATTGCAGTAGAAGTGCAGAGTGAGTCTAAATGGAAGCAGTTGGGAGAATTAGCCATGTCTAGTGGAAAGTTGGCAATGGCTGAGGAATGTTTAGAGTATGCAATGGATTTGAGTGGGTTGTTACTGCTATATTCTTCTTTAGGAGATGCTGAAGGAATATCAAAACTTGCCACCCTTGCTAAGGAGCAAGGGAAGAACAATGTCTCATTCCTTTGCTTATTTATGTTGGGTAAACTTGAAGACTGCCTTCAACTGTTGGTAGAAAGCAATCGAATTCCAGAGGCAGCTTTAATGGCTCGTTCTTATCTCCCAAGCAAGGTCTCAGAGATAGTGGCAATATGGAGAAAAGATCTTAATAAGGTTAATCCAAAAGCTGCTGAATCGTTGGCTGATCCTGAGGAATATCCTAATTTGTTTGAAGACTGGCAAGTTGCACTTGCCGTTGAATCTAAAGCTGCAGAATCAAGGAATGTTTACCCTCCTGCAGAGCAGTACATCAGCCATGCTGACAAGTCACATGTTACCCTTGTTGAAGCTTTCAGAAACATGCAGATTGAAGAAGGAGACGAGCCTCTTGAGAATGGGGACTCTAGTCACGAGTTGACAGAGCAAAATGGAGAAGATGACTATGCAGAGGCACTGGAAGAACCAAATGGAGAGGAAGGAAGCCAAGAGGAGGAAGTTGTAGTGGATGCTGATTCTACAGATGGTGCAGTACTCGTTAATGGTAACGAGGCTGACGAAGAGTGGGTGCTTGCACCACATCACTAG 2751 0.4217 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMAKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYSLERVWAIGYLKGSRRVVIGYDEGTIMVKLGREVPVASMDNSGKIIWAKHNEIQTVNIKSVGVDVEIADGERLPLAVKELGTCDLYPQNLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSTDGEYAIRESTSKIKIFSKSFQEKRSVRPTFSAERIFGGTLLAMCSNDFICFYDWAECRLIYRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVASHLDSGRPVDEEGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVYLIDKEFNVIGYTLLLSLIEYKTLVMRGDLERANEVLPSIPKEHHNSVARFLESRGMIEEALEVATDPDYKFDLAIQLGRLDVAKGIAVEVQSESKWKQLGELAMSSGKLAMAEECLEYAMDLSGLLLLYSSLGDAEGISKLATLAKEQGKNNVSFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAESLADPEEYPNLFEDWQVALAVESKAAESRNVYPPAEQYISHADKSHVTLVEAFRNMQIEEGDEPLENGDSSHELTEQNGEDDYAEALEEPNGEEGSQEEEVVVDADSTDGAVLVNGNEADEEWVLAPHH* 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0173 916 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Lan3g0173 916 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Lan3g0173 916 Pfam WD domain, G-beta repeat 133 171 IPR001680 GO:0005515
Lan3g0173 916 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Lan3g0173 916 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Lan3g0173 916 MobiDBLite consensus disorder prediction 867 892 - -
Lan3g0173 916 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Lan3g0173 916 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Lan3g0173 916 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Lan3g0173 916 PANTHER COATOMER SUBUNIT BETA' 1 874 - -
Lan3g0173 916 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Lan3g0173 916 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Lan3g0173 916 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Lan3g0173 916 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Lan3g0173 916 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Lan3g0173 916 MobiDBLite consensus disorder prediction 849 866 - -
Lan3g0173 916 PIRSF Beta'-COP 2 892 IPR016453 -
Lan3g0173 916 CDD WD40 17 297 - -
Lan3g0173 916 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Lan3g0173 916 MobiDBLite consensus disorder prediction 849 916 - -
Lan3g0173 916 PANTHER COATOMER 1 874 - -
Lan3g0173 916 Gene3D - 11 300 IPR015943 GO:0005515
Lan3g0173 916 SUPERFAMILY WD40 repeat-like 227 494 IPR036322 GO:0005515
Lan3g0173 916 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Lan3g0173 916 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Lan3g0173 916 Gene3D - 590 798 - -
Lan3g0173 916 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Lan3g0173 916 SMART WD40_4 218 257 IPR001680 GO:0005515
Lan3g0173 916 SMART WD40_4 131 171 IPR001680 GO:0005515
Lan3g0173 916 SMART WD40_4 174 215 IPR001680 GO:0005515
Lan3g0173 916 SMART WD40_4 46 85 IPR001680 GO:0005515
Lan3g0173 916 SMART WD40_4 88 127 IPR001680 GO:0005515
Lan3g0173 916 SMART WD40_4 4 43 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0173 Lan-Chr3 1110948 1121419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0173 51 292 Miscellaneous Gene Families AT5G08390 25.403 3.71e-19 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0173 K17302 - gmx:100815780 1764.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0234 10 1485169 1495637 Lan3g0173 3 1110948 1121419 LSH
Lan3g0173 3 1110948 1121419 Lan9g0683 9 10007353 10019874 PCT
Lan3g0173 3 1110948 1121419 Lan2g0448 2 4858733 4875927 PCT
Lan9g0683 9 10007353 10019874 Lan3g0173 3 1110948 1121419 PCT
Lan2g0448 2 4858733 4875927 Lan3g0173 3 1110948 1121419 PCT