Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0234 ATGCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCACAAAGATCAGAAAGAGTAAAATCTGTGGATCTGCATCCAACAGAACCATGGATTCTCGCAAGTTTGTACTCGGGGACTGTCTGTATCTGGAACTATCAATCTCAGATCATGGCCAAATCTTTTGAGGTTACAGAGTTACCAGTTAGGTCAGCCAAGTTTGTTGCGCGCAAACAGTGGGTTGTTGCTGGCGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTCAAAGTATTTGAGGCACATACAGATTACATTCGATGTGTGGCAGTTCATCCTACCCTTCCTTACGTGCTCTCATCGTCTGATGATATGCTCATAAAGCTTTGGGATTGGGATAAAGGCTGGGTTTGTACCCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTCAATCCTAAAGACACCAACACCTTTGCCAGTGCATCTCTGGACCGCACTATAAAGATTTGGAATCTTGGCTCTCCTGACCCTAATTTTACATTGGATGCCCATCAAAAAGGAGTGAATTGCGTTGATTACTTCACAGGTGGTGACAAACCTTTTCTCATCACTGGTTCTGATGATCACACTGCCAAGGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACGCTAGAAGGTCACACTCATAATGTATCAGCTGTATGCTTTCATCCTGAGCTTCCTATAATCATTACTGGTTCTGAGGATGGTACTGTACGCATATGGCATTCAACGACTTATAGACTTGAGAATACATTGAACTACGGTCTTGAGAGAGTATGGGCTATTGGATACTTGAAGGGTTCACGCCGGGTTGTGATTGGCTATGACGAAGGAACAATCATGGTCAAACTTGGTCGAGAAGTACCCGTGGCTAGCATGGACAACAGTGGGAAAATTATTTGGGCTAAGCATAATGAAATTCAGACTGTTAATATAAGGAGTGTAGGAGCAGATGTGGAGGTTGCTGATGGAGAAAGATTACCTTTGGCCGTTAAGGAGTTGGGCACCTGTGATCTCTACCCACAAAATTTAAAGCACAATCCCAATGGGAGATTTGTTGTTGTATGTGGAGATGGTGAGTATATTATATACACTGCTTTGGCATGGAGAAATAGGTCATTTGGTTCGGCACTGGAATTTTTTTGGTCTACGGATGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGGAAAAGAGGAGTTTCCGACCAACATTTTCAGCTGAACGAATATTTGGTGGCACTTTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAAACCTCTACTGGGCTGATAGTGGTGATCTTGTAACAATCGCAAGTGATACATCATTCTACATCCTGAAGTACAATCGTGATGTTGTTGCATCACATTTAGATAGTGGAAGACCCGTAGATGAGGAGGGTGTTGAAGATGCTTTTGAGCTCCTTCATGAAATGAATGAACGTGTCAGGACAGGCATCTGGGTTGGGGATTGTTTTATATACAATAATTCCTCTTGGAGACTTAATTACTGTGTTGGTGGTGAGGTAACTACAATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCGAACCAAAGTCGGGTTTATTTGATTGACAAAGAGTTTAATGTTATTGGATACACACTGCTTTTAAGCTTGATTGAATACAAGACACTTGTGATGCGTGGTGATTTAGAAAGGGCAAATGAAATTCTGCCATCAATTCCTAAAGAACATCACAACAGTGTGGCTCATTTCCTGGAATCGCGAGGGATGATAGAGGAGGCTCTTGAAGTAGCAACTGACCCCGACTACAGGTTTGATCTAGCAATACAACTTGGGAGATTAGACGTTGCAAAGAGTATTGCAGTAGAAGTTCAGAGTGAGTCTAAATGGAAGCAGCTGGGAGAATTGGCCATGTCTAGTGGAAAGTTGGCAATGGCTGAGGAATGTTTGGGGCATGCAATGGATTTAAGTGGGTTGTTACTGCTATACTCTTCTTTGGGAGATGCTGAAGGAATATCAAAACTTGCAACCCTTGCTAAGGAGCAAGGGAAGAACAATGTCTCCTTCCTTTGCTTATTTATGTTGGGCAAACTTGAAGACTGCCTTCAACTGCTGGTAGAAAGCAATCGAATTCCAGAAGCAGCTTTAATGGCTCGATCTTATCTCCCGAGCAAGGTCTCAGAGATAGTGGCAATATGGAGAAAAGATCTTAATAAGGTTAATCCAAAAGCTGCTGAGTCGTTGGCTGATCCTGAGGAATATCCTAATCTCTTTGAAGACTGGCAAGTTGCACTTGCCATTGAATCTAAAGCTGTGGAATCAAGGAATGTTTACCCTCCTGCAGAGCAGTACATCAACCATGCTGACAAACCACATGTTACCCTTGTTGAGGCTTTCAGAAACATGCAGATTGAAGAAGAGGAGCCTCTTGAGAATGGGGACTCTAATCATGAGTTAACTGAGGAAAATGGAGAAGAGGACTATACAGAGGCACAAGAGGAACCAAATGGAGAGGAAGGAAGCCAAGAGGAGGCAGTTGTAGTGGATGCTGATTCTACAGATGGTGCAGTACTCGTCAATGGTAGCGAGGCTGAAGAAGAGTGGGTGCTTGCACCACATCACTAG 2748 0.4243 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWDKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPFLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKGSRRVVIGYDEGTIMVKLGREVPVASMDNSGKIIWAKHNEIQTVNIRSVGADVEVADGERLPLAVKELGTCDLYPQNLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFFWSTDGEYAVRESTSKIKIFSKNFQEKRSFRPTFSAERIFGGTLLAMCSNDFICFYDWAECRLIYRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVASHLDSGRPVDEEGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVYLIDKEFNVIGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVAHFLESRGMIEEALEVATDPDYRFDLAIQLGRLDVAKSIAVEVQSESKWKQLGELAMSSGKLAMAEECLGHAMDLSGLLLLYSSLGDAEGISKLATLAKEQGKNNVSFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAESLADPEEYPNLFEDWQVALAIESKAVESRNVYPPAEQYINHADKPHVTLVEAFRNMQIEEEEPLENGDSNHELTEENGEEDYTEAQEEPNGEEGSQEEAVVVDADSTDGAVLVNGSEAEEEWVLAPHH* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0234 915 SUPERFAMILY WD40 repeat-like 227 494 IPR036322 GO:0005515
Lan10g0234 915 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Lan10g0234 915 Gene3D - 590 798 - -
Lan10g0234 915 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Lan10g0234 915 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Lan10g0234 915 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Lan10g0234 915 Gene3D - 11 300 IPR015943 GO:0005515
Lan10g0234 915 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Lan10g0234 915 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Lan10g0234 915 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Lan10g0234 915 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Lan10g0234 915 SMART WD40_4 218 257 IPR001680 GO:0005515
Lan10g0234 915 SMART WD40_4 174 215 IPR001680 GO:0005515
Lan10g0234 915 SMART WD40_4 88 127 IPR001680 GO:0005515
Lan10g0234 915 SMART WD40_4 46 85 IPR001680 GO:0005515
Lan10g0234 915 SMART WD40_4 131 171 IPR001680 GO:0005515
Lan10g0234 915 SMART WD40_4 4 43 IPR001680 GO:0005515
Lan10g0234 915 PANTHER COATOMER 1 873 - -
Lan10g0234 915 CDD WD40 17 297 - -
Lan10g0234 915 MobiDBLite consensus disorder prediction 861 881 - -
Lan10g0234 915 MobiDBLite consensus disorder prediction 847 915 - -
Lan10g0234 915 PIRSF Beta'-COP 2 888 IPR016453 -
Lan10g0234 915 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Lan10g0234 915 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Lan10g0234 915 Pfam WD domain, G-beta repeat 133 171 IPR001680 GO:0005515
Lan10g0234 915 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Lan10g0234 915 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Lan10g0234 915 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Lan10g0234 915 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Lan10g0234 915 PANTHER COATOMER SUBUNIT BETA' 1 873 - -
Lan10g0234 915 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Lan10g0234 915 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0234 Lan-Chr10 1485169 1495637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0234 51 292 Miscellaneous Gene Families AT5G08390 24.597 4.73e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0234 K17302 - gmx:100815780 1778.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0234 10 1485169 1495637 Lan3g0173 3 1110948 1121419 LSH
Lan10g0234 10 1485169 1495637 Lan9g0683 9 10007353 10019874 PCT
Lan10g0234 10 1485169 1495637 Lan2g0448 2 4858733 4875927 PCT
Lan9g0683 9 10007353 10019874 Lan10g0234 10 1485169 1495637 PCT
Lan2g0448 2 4858733 4875927 Lan10g0234 10 1485169 1495637 PCT