LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan2g0249	ATGGGTTTCAACTTTCTGTCCCTTGCGATTTTCATCTTAGCTTTCTCTTCTTCTTCTTCTTTTTCTTCTTCTTTTTTCAATATCGCTGGGGCTGAAACTGAACAGCAACACCTTTCTATTTCAATCCTTAATTCTCCTATTCTCAAGGAGTCTATTGCTAAACAGATTAATGAAAACCCAGAGGCAGGATGGGAGGCTGCTATCAATCCTCGTTTCTCCAATTTCACAGTTGCTCAATTTAAGCGCCTTCTTGGAGTCAAAAAATCTTCCAGGAATGAACTGACTAGTACACCTGTTATAACTCATCCTAAATCATTGAAATTGCCAAAGAATTTTGATGCAAGGACAGCTTGGTCACAGTGTAGCACCATTGGAAGAATTCTAGATCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTTGAATCTTTACAAGATCGTTTTTGTATTCATTTCGACGTGAATGTCACTCTCTCTGTTAATGATCTTCTCGCATGCTGTGGCTTTTTGTGCGGATTTGGTTGTGATGGGGGAGAACCTCTATATGCATGGCGGTACTTAAGCCATCATGGTGTTGTTTCCGATGAGTGTGACCCATACTTTGATCAAATTGGGTGTGCTCACCCTGGTTGTGAGCCATCATATCCAACTCCCAAATGTGTTAAAAAATGTGTGAGTGGGAACCAGCTTTGGAGGAAATCGAAGCACTATAGTGTGAGGGCGTACAAGGTCAAATCTAATCCCAATGATATTATGGCAGAAGTTTATAAGAATGGGCCCGTGGAAGTTGCATTCACTGTTTATGAGGATTTTGCTCACTACAAATCAGGAGTTTACAAACACATCACAGGCGTTGCACTTGGTGGCCATGCTGTAAAGCTGATTGGGTGGGGAACAAGTGATGATGGGGAGGATTATTGGCTTCTTGCAAACCAATGGAATAGAAGCTGGGGAGATGATGGATACTTCAAGATCAAAAGAGGGACGAACGAATGCGGGATTGAAGGTGATATTACTGCTGGTTTGCCTTCATCCAAAAATCTCATAAGAGAGGTGACTGATATGGATGCTAACTCTGATGTTTCATTCTGA	1095	0.4192	MGFNFLSLAIFILAFSSSSSFSSSFFNIAGAETEQQHLSISILNSPILKESIAKQINENPEAGWEAAINPRFSNFTVAQFKRLLGVKKSSRNELTSTPVITHPKSLKLPKNFDARTAWSQCSTIGRILDQGHCGSCWAFGAVESLQDRFCIHFDVNVTLSVNDLLACCGFLCGFGCDGGEPLYAWRYLSHHGVVSDECDPYFDQIGCAHPGCEPSYPTPKCVKKCVSGNQLWRKSKHYSVRAYKVKSNPNDIMAEVYKNGPVEVAFTVYEDFAHYKSGVYKHITGVALGGHAVKLIGWGTSDDGEDYWLLANQWNRSWGDDGYFKIKRGTNECGIEGDITAGLPSSKNLIREVTDMDANSDVSF*	365

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan2g0249	364	SMART	pept_c1	108	343	IPR000668	GO:0006508\|GO:0008234
	Lan2g0249	364	CDD	Peptidase_C1A_CathepsinB	109	342	-	-
	Lan2g0249	364	ProSitePatterns	Eukaryotic thiol (cysteine) proteases histidine active site.	289	299	IPR025660	-
	Lan2g0249	364	PANTHER	CATHEPSIN B-LIKE PROTEASE 3	50	350	-	-
	Lan2g0249	364	Pfam	Peptidase family C1 propeptide	49	88	IPR012599	GO:0004197\|GO:0050790
	Lan2g0249	364	PRINTS	Papain cysteine protease (C1) family signature	130	145	IPR000668	GO:0006508\|GO:0008234
	Lan2g0249	364	PRINTS	Papain cysteine protease (C1) family signature	291	301	IPR000668	GO:0006508\|GO:0008234
	Lan2g0249	364	PRINTS	Papain cysteine protease (C1) family signature	307	313	IPR000668	GO:0006508\|GO:0008234
	Lan2g0249	364	PANTHER	CYSTEINE PROTEASE FAMILY C1-RELATED	50	350	-	-
	Lan2g0249	364	Gene3D	Cysteine proteinases	40	350	-	-
	Lan2g0249	364	SUPERFAMILY	Cysteine proteinases	53	344	IPR038765	-
	Lan2g0249	364	ProSitePatterns	Eukaryotic thiol (cysteine) proteases cysteine active site.	130	141	IPR000169	-
	Lan2g0249	364	Pfam	Papain family cysteine protease	108	341	IPR000668	GO:0006508\|GO:0008234

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan2g0249	Lan-Chr2	2054154	2058770	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan2g0249	K01363		-	gmx:100788988	607.06

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan16g0960	16	16670919	16675588	Lan2g0249	2	2054154	2058770	LSH