LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan16g0960	ATGAGTTCCACTCTTCTTCTGTTCTTCTTAGCTTTTTCCTCTTCTTTTCTTCAGATCAATGGGGCAGAAGCAGAACACCTTACTAGTTTGAAGCTTAAATCTCCTATTCTACAGGAGTCTATTGCTAAACAGATTAATGAAAATCCAGAGGCAGGATGGGAGGCTGCTATCAATCCTCGTTTCTCCAATTTCACAGTTGCACAATTTAAACGCCTTCTTGGATTTAAAAAAACATCAAGGAAGGAACTGACTAGTACACCTGTTATAACTCATCCTAAATCTTTGAAATTGCCAAAGCATTTTGATGCAAGGACAGCTTGGTCACAGTGTAGCACTATTGGAAGAATTCTAGATCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGAGCAGTTGAATCATTACAAGATCGTTTTTGCATTCATTTCGACGTGAATATCACTCTCTCTGTTAACGATCTTCTCGCATGCTGTGGCTTTTTGTGCGGAGATGGTTGTGATGGTGGAGAACCTCTATATGCATGGCGATACTTAAGCAATCATGGCGTTGTTACCGAAGAGTGTAACCCATACTTTGATCAAATTGGCTGTGCCCACCCTGGTTGTGAGCCAGCATATCAAACTCCCAAGTGTGTTAAAAAGTGTGTGGGTGGGAACTTGCTTTGGAAGAGGTCAAAGCACTACAGTGTCAGCGCATACCGGGTCAAATCTGATCCTTATGATATCATGGCAGAAGTTTATAAGAATGGGCCCGTTGAAGTTGGGTTCACTGTTTATGAGGATTTTGCTCACTACAAATCAGGAGTTTACAAACACATCACAGGTTTTGCACTTGGTGGCCATGCTGTAAAGCTGATTGGGTGGGGAACAAGTGATGATGGGGATGACTACTGGCTTCTTGCAAACCAATGGAATAGAAGCTGGGGAGATGATGGATACTTCAAGATCAAAAGAGGGACAAACGAATGCGGGATCGAAGATGATATTACTGCTGGTTTGCCTTCAACCAAAAATCTCATAAGAGAGGTGACTGATATGGATACTGATATTGATGTTTCATTCTGA	1062	0.42	MSSTLLLFFLAFSSSFLQINGAEAEHLTSLKLKSPILQESIAKQINENPEAGWEAAINPRFSNFTVAQFKRLLGFKKTSRKELTSTPVITHPKSLKLPKHFDARTAWSQCSTIGRILDQGHCGSCWAFGAVESLQDRFCIHFDVNITLSVNDLLACCGFLCGDGCDGGEPLYAWRYLSNHGVVTEECNPYFDQIGCAHPGCEPAYQTPKCVKKCVGGNLLWKRSKHYSVSAYRVKSDPYDIMAEVYKNGPVEVGFTVYEDFAHYKSGVYKHITGFALGGHAVKLIGWGTSDDGDDYWLLANQWNRSWGDDGYFKIKRGTNECGIEDDITAGLPSTKNLIREVTDMDTDIDVSF*	354

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan16g0960	353	Gene3D	Cysteine proteinases	27	339	-	-
	Lan16g0960	353	Pfam	Papain family cysteine protease	97	330	IPR000668	GO:0006508\|GO:0008234
	Lan16g0960	353	ProSitePatterns	Eukaryotic thiol (cysteine) proteases histidine active site.	278	288	IPR025660	-
	Lan16g0960	353	Pfam	Peptidase family C1 propeptide	37	78	IPR012599	GO:0004197\|GO:0050790
	Lan16g0960	353	CDD	Peptidase_C1A_CathepsinB	98	331	-	-
	Lan16g0960	353	PANTHER	CYSTEINE PROTEASE FAMILY C1-RELATED	13	340	-	-
	Lan16g0960	353	PANTHER	CATHEPSIN B-LIKE PROTEASE 3	13	340	-	-
	Lan16g0960	353	SMART	pept_c1	97	332	IPR000668	GO:0006508\|GO:0008234
	Lan16g0960	353	SUPERFAMILY	Cysteine proteinases	41	333	IPR038765	-
	Lan16g0960	353	PRINTS	Papain cysteine protease (C1) family signature	119	134	IPR000668	GO:0006508\|GO:0008234
	Lan16g0960	353	PRINTS	Papain cysteine protease (C1) family signature	280	290	IPR000668	GO:0006508\|GO:0008234
	Lan16g0960	353	PRINTS	Papain cysteine protease (C1) family signature	296	302	IPR000668	GO:0006508\|GO:0008234
	Lan16g0960	353	ProSitePatterns	Eukaryotic thiol (cysteine) proteases cysteine active site.	119	130	IPR000169	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan16g0960	Lan-Chr16	16670919	16675588	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan16g0960	K01363		-	gmx:100788988	630.557

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan16g0960	16	16670919	16675588	Lan2g0249	2	2054154	2058770	LSH