Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0235 ATGAAGCATTCTCATATTTTACCACTAGTGTTCTGCATATTTTTCTCTACTTTCTTTCTTTCCATTCAAGCTAGGCATCATTCTCATACAAAACAAAAACACTCACATTCTCATAAATCATATGAAACTTCACCACCTCCTAGCCAAAACTATAGTACCCCATCAAACATTTTAGATGTAAGAACATTTGGAGCCATAGGAGATGGAATATCAGATGATACAGAATCATTCAAAATGGCATGGGACACTGCATGTGAAAGTGAATTACCACATAATATTATCCTTGTTCCACAAGGTTTCTCTTTTATCATTCACTCTACAATTTTCACAGGTCCATGTCAAGGTGACTTAGTATTTAAGGTTGATGGCACTGTTATGCCACCTGATGGACCAGATTCTTGGCCTAAGAATAATAGTAAGCATCAATGGCTGGTTTTTTACAGAATCAATGGAATGTCATTAGAAGGTAGTGGTCTAATAAATGGTAGAGGACAAAAATGGTGGGACCTTCCTTGTAAACCTCACAAGGGACCTAATGGAACAACACTCGAAGGACCTTGTGATAGCCCAATTGCCATAAGGTTTTTCATGAGTTCCAACTTGACTATGCATGGACTTAGAATAGAGAATAGCCCACAATTCAATGTCAGATTTGATGGATGTGAAAATGTTCATATAGAATCAATCTTCATAAAAGCTCCAAAAGATAGCCCCAACACCGATGGAATCCACATAGAAAATACCAATGATGTGAAAATATACAATTCTCTGATTTCTAATGGGGATGATTGTGTGTCGATTGGATCTGGCTGCTATGATGTGGATATAAAGAACATTACATGTGGACCTGGTCATGGAATTAGCATTGGTAGCTTGGGAAATCACAACTCTAGAGCCTGTGTTTCAAACATCACAGTAAGAGACTCAGTGATAAAATTTACAGATAATGGTGTTAGAATCAAGACATGGCAAGGTGGATCAGGATCTGTATCAGGTGTAACATTCAACAATATTCACATGGAAAGTGTAAGAAATCCAATCATAATTGACCAATTCTATTGCCTCACTAAGGATTGCACCAACAAAACTTCTGCAGTCACTGTATCAAATATACTTTACACTAATATCAAAGGAACATATGATATAAGAAGCCCCCCTATGCAATTTGCATGCAGTGATTCTGTTCCTTGCACTAACTTAACACTCTCAGATATTGAACTTCTTCCTAGTCAAGGTGATATAGTGCATGATCCTTTTTGTTGGAATGCTTATGGAGATTTACAGACACTAACTATTCCACCAGTCTTTTGCTTGATCGAGGGAACGCCGCGGTTCGTGTTGGAAAATGACATTAGTCATTGCTGA 1365 0.3758 MKHSHILPLVFCIFFSTFFLSIQARHHSHTKQKHSHSHKSYETSPPPSQNYSTPSNILDVRTFGAIGDGISDDTESFKMAWDTACESELPHNIILVPQGFSFIIHSTIFTGPCQGDLVFKVDGTVMPPDGPDSWPKNNSKHQWLVFYRINGMSLEGSGLINGRGQKWWDLPCKPHKGPNGTTLEGPCDSPIAIRFFMSSNLTMHGLRIENSPQFNVRFDGCENVHIESIFIKAPKDSPNTDGIHIENTNDVKIYNSLISNGDDCVSIGSGCYDVDIKNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKFTDNGVRIKTWQGGSGSVSGVTFNNIHMESVRNPIIIDQFYCLTKDCTNKTSAVTVSNILYTNIKGTYDIRSPPMQFACSDSVPCTNLTLSDIELLPSQGDIVHDPFCWNAYGDLQTLTIPPVFCLIEGTPRFVLENDISHC* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0235 454 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 7 444 - -
Lan2g0235 454 SUPERFAMILY Pectin lyase-like 53 443 IPR011050 -
Lan2g0235 454 Gene3D - 42 436 IPR012334 -
Lan2g0235 454 SMART pbh1 330 351 IPR006626 -
Lan2g0235 454 SMART pbh1 248 269 IPR006626 -
Lan2g0235 454 SMART pbh1 221 247 IPR006626 -
Lan2g0235 454 SMART pbh1 198 220 IPR006626 -
Lan2g0235 454 SMART pbh1 271 291 IPR006626 -
Lan2g0235 454 SMART pbh1 301 322 IPR006626 -
Lan2g0235 454 MobiDBLite consensus disorder prediction 30 52 - -
Lan2g0235 454 ProSitePatterns Polygalacturonase active site. 278 291 IPR000743 GO:0004650|GO:0005975
Lan2g0235 454 PANTHER - 7 444 - -
Lan2g0235 454 Pfam Glycosyl hydrolases family 28 93 408 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0235 Lan-Chr2 1928706 1931942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0235 57 454 Glycoside Hydrolase AT1G02460 71.072 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0235 - - lang:109331836 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0235 2 1928706 1931942 Lan20g0554 20 4207256 4209580 PCT
Lan20g0554 20 4207256 4209580 Lan2g0235 2 1928706 1931942 PCT