Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0554 ATGGGGCATTCTAGTATTTTACCAATAGGAATATTCTCCATATATTTTCTTACTTCATTGTTATGCATCCAAGGTAGATATCATTTCCATAAACACAATAACTCACATTCTCATCATACATATGCACCTTCTATAGCTTCCCCTCCTGCTGAAGCTCCTGGCCCTGCTAGTAATGATAACTACACTAATGAACCTGGCTTTTATGATATAAGAGCATTTGGTGGCATTGGAGATGGAATAAGTGATGACACTGAGTCATTGAAAATGGCTTGGGATGCTGCTTGCCAAAGTGAATTACAAGTTAATGTTATTCATCTTCCACGTGGTTTCTCCTTTGTTATTCACCCTAATATCTTCACAGGCCCTTGTAAAGGTAGCTTAATGTTAAGGGTTGATGGCACTCTTATGCCACCTGATGGACCAGAATCTTGGCCTAACAATACTAGTAAGCGTCAATGGCTGATTTTTTACAGAATCACTGGAATGTCACTTGAAGGAACTGGTTTAATAGATGGTAGAGGACAAAAATGGTGGGACCTTCCTTGCAAGCCTCATAAGGGACCTAATGGTACAACAGCTCCAGGACCTTGTGATAGCCCAATTGCCTTAAGGTTTTTCATGAGTTCCAACTTAACTGTGCAAGGACTTAGGATCAAGAACAGCCCTCAGTTCCATTTCAGATTTGATGGCTGTGAAAGTGTCCATATAGAATCAATTTACATAACAGCTCCGGCGCTTAGCCCCAATACTGATGGAATACACATAGAAAATACCAATGATGTGAGGATATACAATTCTGTCGTTTCTAATGGTGATGATTGTGTGTCCATTGGATCTGGTTCCTATGATGTTGATATAAAGAATATCACATGTGGACCTGGTCATGGTATTAGCATCGGTAGTCTCGGAAATCACGACTCTAGAGCCTGTGTTTCAAACATTACAGTGAGAGACTCAGTTATAAAAGTTTCAGATAATGGAGTTAGAATAAAGACATGGCAAGGAGGATCAGGATCAGTATCAGGAGTGACATTCAGTAACATTGAAATGGATAGTGTTAAAAATCCAATTATAATTGACCAATTCTATTGCCTCTCTAAGGAATGTAATAACAAGACCTCTGCAGTGTTTGTATCAGATATACTTTACACAAACATAAAGGGAACTTATGATATAAGGCATCCACCTATGCATTTTGCTTGCAGTGACTCTGTCCCATGCACCAACTTGACTCTCTCTGATATTGAGCTTCTTCCGGCTCAAGGAGATATGGTTCTTGATCCTTTCTGTTGGAATGCTTATGGAAATTTGGACACACTAACCATTCCTCCGGTCTCTTGCTTGATGGAGGGTATTCCTCCTCAGTCCATTGTAGGCAATGAAATATATCATTGCTGA 1398 0.397 MGHSSILPIGIFSIYFLTSLLCIQGRYHFHKHNNSHSHHTYAPSIASPPAEAPGPASNDNYTNEPGFYDIRAFGGIGDGISDDTESLKMAWDAACQSELQVNVIHLPRGFSFVIHPNIFTGPCKGSLMLRVDGTLMPPDGPESWPNNTSKRQWLIFYRITGMSLEGTGLIDGRGQKWWDLPCKPHKGPNGTTAPGPCDSPIALRFFMSSNLTVQGLRIKNSPQFHFRFDGCESVHIESIYITAPALSPNTDGIHIENTNDVRIYNSVVSNGDDCVSIGSGSYDVDIKNITCGPGHGISIGSLGNHDSRACVSNITVRDSVIKVSDNGVRIKTWQGGSGSVSGVTFSNIEMDSVKNPIIIDQFYCLSKECNNKTSAVFVSDILYTNIKGTYDIRHPPMHFACSDSVPCTNLTLSDIELLPAQGDMVLDPFCWNAYGNLDTLTIPPVSCLMEGIPPQSIVGNEIYHC* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0554 465 Pfam Glycosyl hydrolases family 28 102 417 IPR000743 GO:0004650|GO:0005975
Lan20g0554 465 SUPERFAMILY Pectin lyase-like 65 453 IPR011050 -
Lan20g0554 465 ProSitePatterns Polygalacturonase active site. 288 301 IPR000743 GO:0004650|GO:0005975
Lan20g0554 465 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 9 454 - -
Lan20g0554 465 Gene3D - 51 449 IPR012334 -
Lan20g0554 465 SMART pbh1 258 279 IPR006626 -
Lan20g0554 465 SMART pbh1 311 332 IPR006626 -
Lan20g0554 465 SMART pbh1 231 257 IPR006626 -
Lan20g0554 465 SMART pbh1 340 361 IPR006626 -
Lan20g0554 465 SMART pbh1 281 301 IPR006626 -
Lan20g0554 465 MobiDBLite consensus disorder prediction 40 59 - -
Lan20g0554 465 PANTHER - 9 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0554 Lan-Chr20 4207256 4209580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0554 66 465 Glycoside Hydrolase AT1G02460 71.712 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0554 - - gmx:100792285 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0235 2 1928706 1931942 Lan20g0554 20 4207256 4209580 PCT
Lan20g0554 20 4207256 4209580 Lan2g0235 2 1928706 1931942 PCT