Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1025 ATGAAACGCATGGATATTTTCTGCACTTCTCAAGCCTCGACAGCTATATGTCTTAGCATGGATCCATCAGCATCATGTTCTTCTTCCAACACCATTCAACTTGGTGGCAAAGCCATTGATCGCCACAACCCCATTATTATCAGTGATTCAAGAAGAACAACCTCAAAATCTCTCACTACTATTGACCCTAAACCTTATCATGAACAACAAAACCAAAAGGCCAAGAATAAGAACTCATCTTCCAAACCAAGTAGCAAGAAGAATGAAAAAGCAATAAAGGGTCATGATCAGAAGAAGAAAAGTATAGCAGAAAAGGTTACTGAACATGTGAGTAATAGTTACTCTTCTAAGCCAATTGATAGTGTTCTAAGGAGGAGTTGGCTTAAGCCACCTAGTGAATTATTCACTCCTCCTGGTTCAACTAGATGTTTGCTTAGTGATGTGACCTTAGTGGATGGTTTATCAGATAATGAACCAGTTTTGGCATTAGCTATGGTTAATGATAATAAAAAGGCTCAAATTGTTCATCAAAATGAAACCATCCTTGGATCTAAACCCTCTAGTTCTTCTCTGAAAAGTTCTGGATCCTCAGATCAGGTTGTGGAATTGAGGGTGTCTTTGCACTGCAAAGGCTGTGAAGGGAAAGTGAGGAAACATCTCTCTAGAATGAAAGGAGTTACTTCATTCAACATAGATTTTAAGGCAAAGAAGGTGACAGTAGTTGGTGATGTGACTCCATTGAGTGTTTTGACAAGCATATCAAAGGTGAAAAATGCTCAATTTTGGCCAGCATCAGCATCTGGATCTGGTTTTGTAGAGACTAGAGGAAATTTTTATATCTAA 843 0.3843 MKRMDIFCTSQASTAICLSMDPSASCSSSNTIQLGGKAIDRHNPIIISDSRRTTSKSLTTIDPKPYHEQQNQKAKNKNSSSKPSSKKNEKAIKGHDQKKKSIAEKVTEHVSNSYSSKPIDSVLRRSWLKPPSELFTPPGSTRCLLSDVTLVDGLSDNEPVLALAMVNDNKKAQIVHQNETILGSKPSSSSLKSSGSSDQVVELRVSLHCKGCEGKVRKHLSRMKGVTSFNIDFKAKKVTVVGDVTPLSVLTSISKVKNAQFWPASASGSGFVETRGNFYI* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1025 280 Pfam Heavy-metal-associated domain 203 249 IPR006121 GO:0046872
Lan20g1025 280 SUPERFAMILY HMA, heavy metal-associated domain 199 256 IPR036163 GO:0046872
Lan20g1025 280 Gene3D - 197 260 - -
Lan20g1025 280 MobiDBLite consensus disorder prediction 48 81 - -
Lan20g1025 280 PANTHER COPPER CHAPERONE 1 269 - -
Lan20g1025 280 MobiDBLite consensus disorder prediction 43 111 - -
Lan20g1025 280 PANTHER OS08G0405700 PROTEIN 1 269 IPR044526 -
Lan20g1025 280 MobiDBLite consensus disorder prediction 82 106 - -
Lan20g1025 280 CDD HMA 202 255 IPR006121 GO:0046872
Lan20g1025 280 ProSiteProfiles Heavy-metal-associated domain profile. 206 256 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1025 Lan-Chr20 11055504 11057603 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1025 - - gmx:100813295 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0321 5 5349841 5352024 Lan20g1025 20 11055504 11057603 PCT
Lan20g1025 20 11055504 11057603 Lan5g0321 5 5349841 5352024 PCT