Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1958 ATGCAGTCTTTATGTGTGAAAAGTTTTGTTGGTGTTGGAAGTGATTGGGTGAATTGCATGAGAAGAAAAAGTGGTAATGTTAATGTTAATGTTGTTGTAGCATGTGGTTCTTCTAAGGGAGACCCAATGAGTGTTCCAACATCTTCTTTTGTGTCTCGTACTCAAACCTATGCTTTGTTGAAGCATCAAATGGAGGTAGCTGCAAAATCTGAGGATTACAAAGAAGCTGCAAGGATAAGAGACTCACTCAAGTTATTTGAAGATGAGGAGCCTGTTTTGCGTCTCACTAGACTCTTGAATGAAGCTGTTGCTGATCAGAGGTTTCAGGACGCAGCTAGATATCGCGATGAGCTAAAAAAGGTTGCTCCACATTCTCTTTTAAAATGCTCCAGTGAAGCTACAACACTGGGAATCAAGGTTCAAGTTAGAAGTGTATATATAGAGAGCAGAAGCCAGCCTTCAAAGGGGTTATACTTCTTTGCATATAGAATAAGAATTACGAATAACTCGGATCAACCTGTTCAACTTCTCAAGAGGCATTGGATTATAACTGATGCTAATGGGAAAACAGAAAATGTCAGGGGGATCGGCGTTGTTGGTGAACAGCCAACAATACTTCCAGGGACTAGTTTTGAATACTCTTCAGCATGTCCATTAAGCACACCAAGTGGTAGAATGGAAGGCGACTTTGAGATGATACATGTTGATAGAGTAAACTCCCGATCATTCAATGCGGCCATCGCGCCTTTTTCTCTTGCTATGCTTGGAGATGATGGTAGTACTGCTTGA 789 0.4106 MQSLCVKSFVGVGSDWVNCMRRKSGNVNVNVVVACGSSKGDPMSVPTSSFVSRTQTYALLKHQMEVAAKSEDYKEAARIRDSLKLFEDEEPVLRLTRLLNEAVADQRFQDAARYRDELKKVAPHSLLKCSSEATTLGIKVQVRSVYIESRSQPSKGLYFFAYRIRITNNSDQPVQLLKRHWIITDANGKTENVRGIGVVGEQPTILPGTSFEYSSACPLSTPSGRMEGDFEMIHVDRVNSRSFNAAIAPFSLAMLGDDGSTA* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1958 262 Pfam UvrB/uvrC motif 94 120 IPR001943 GO:0005515
Lan1g1958 262 Pfam UvrB/uvrC motif 61 87 IPR001943 GO:0005515
Lan1g1958 262 Pfam ApaG domain 149 233 IPR007474 -
Lan1g1958 262 ProSiteProfiles UVR domain profile. 89 124 IPR001943 GO:0005515
Lan1g1958 262 ProSiteProfiles UVR domain profile. 54 89 IPR001943 GO:0005515
Lan1g1958 262 PANTHER OS05G0170800 PROTEIN 39 259 - -
Lan1g1958 262 Hamap Protein ApaG [apaG]. 131 262 IPR023065 -
Lan1g1958 262 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 55 87 IPR036876 -
Lan1g1958 262 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Lan1g1958 262 ProSiteProfiles ApaG domain profile. 132 259 IPR007474 -
Lan1g1958 262 SUPERFAMILY ApaG-like 134 254 IPR036767 -
Lan1g1958 262 Gene3D ApaG domain 128 257 IPR036767 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1958 Lan-Chr1 34839681 34842561 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1958 - K06195 gmx:100782176 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1958 1 34839681 34842561 Lan15g0633 15 14416420 14421607 PCT
Lan15g0633 15 14416420 14421607 Lan1g1958 1 34839681 34842561 PCT