Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1953 ATGGCCACAACTCCGCAAAAAACGACGCCAATTCCTGATTGGAACCTCGATCATCCTCCAAAGAATCTATCCGTACCTATCACTCAACAACAATCTTCCATTAATGCGCCTCCTCCTTCTCTTCCTCAAGGAATCACTGCATTGACAAGACCCCAGTCAAGCCACCCTTTGGACCCTTTATCTGCTGCCGAAATCACTGTGGCAGTGGCAACTGTGAGAGCAGCTGGTGCCACTCCAGAGCTCAGAGACAGTATGCGCTTTATTGAAGTAGTTTTGTTGGAACCAGATAAAAATGTTGTTGCACTTGCAGATGCTTATTTCTTTCCACCTTTCCAACCATCATTACTTCCTAGAACTAAAGGAGGGCCTGTAATTCCCAGTAAACTCCCTCCAAGATGTGCTCGGCTTGTTGTTTACAATAAGAGGACAAATGAGACTAGTATATGGGTTGTTGAATTATCAGAAGTACATGCAGTAACTCGAGGAGGTCATCACCGTGGAAAAGTAATTTCATCACATGTTGTTCCTGATGTTCAGCCTCCAATGGATGCTGTGGAGTATGCAGAATGTGAAGCTGTTGTTAAAGATTTTCCTCCGTTTAGAGAGGCTATGAAGAAAAGGGGCATTGAGGACATGGACCTTGTAATGGTTGATGCCTGGTGTGTAGGTAATTACAGTGAAGCTGATGCTCCCAGCCGTAGACTTGCTAAACCACTTATATTTTGTCGTGCTGAGAGTGACTGCCCTATGGAAAATGGCTATGCACGCCCTGTTGATGGCATATATGTGCTTGTTGATATGCAAAACATGGTGGTGATTGAGTTTGAAGACCGCAAACTTGTTCCTCTCCCTCCGGTTGATCCCTTGAGGAACTATACTCCTGGTGGAACAAGAGGTGGAGTTGATAGAAGTGATGTAAAGCCCTTGCAAATTATTCAGCCTGAAGGTCCAAGCTTTCGTGTAAATGGACATTATATTGAATGGCAGAAGTGGAACTTTCGTATTGGATTCACGCCCAGAGAAGGTCTGGTTATATATTCTGTTGCATATGTTGATGGCAGTCGAGGGCGAAGGCCTGTAGCTCATCGACTGAGTTTTGTGGAGATGGTTGTGCCCTATGGTGATCCAAATGAACCACATTACAGGAAGAATGCTTTTGATGCTGGGGAAGATGGCTTGGGAAAAAATGCACATTCTCTCAAGAAGGGATGTGATTGTTTGGGCTACATCAAATATTTTGATGCTCACTTCACAAATTTCACCGGTGGAGTTGAGACAATTGAAAATTGTGTATGTTTGCATGAAGAGGATCATGGTATCCTGTGGAAGCATCAAGACTGGAGAACCGGCTTAGCAGAAGTCCGTAGGTCTAGAAGACTTTCAGCTTCTTTTATATGTACCGTGGCTAACTATGAGTATGGATTTTTTTGGCACTTTTATCAGGATGGGAGAATTGAAGCTGAAGTTAAGCTAACTGGAATTCTAAGCTTAGGAGCCTTGCTGCCTGGAGAGTTTCGAAAATATGGAACCATGATTGCACCAGGTCTATACGCTCCAGTTCATCAACACTTTTTTGTTGCTCGCATGGACATGGCTGTGGATTCTAAACCAGGTGACGCTTTGAATCAGGTTGTGGAGATCAATGTCAAAGTTGAGGAACCTGGGGAGAATAATGTCCACAATAATGCATTCTATGCTGAAGAGACTCTGCTAAGATCTGAATTGGAAGCAATGCGTGATTGCAATCCTTTGACTGCTCGACATTGGATTGTAAGGAACACTAGAACAGGAAATAGAACTGGACAATTGACAGGCTATAAGCTAGTACCTGGCTCAAACTGCTTGCCATTAGCAGGATCTGAGGCCAAGTTTTTAAGAAGAGCTGCTTTCTTGAAGCATAATCTTTGGGTAACATCTTATTCACGTGATGAAATGTTTCCCGGAGGGGAATTTCCGAATCAAAATCCACGTGTTGGTGAAGGACTAGCTACATGGGTTAAGCAAAACCGACCTTTGGAAGAAAGTGATATAGTTCTTTGGTATGTATTTGGAATTACTCATGTCCCTCGCTTAGAAGATTGGCCTGTTATGCCAGTAGAACACATTGGTTTTGTGCTCGTGCCTCATGGATTCTTCAATTGCTCCCCTGCAGTAGATGTTCCACCTAGTCAATGTGAAATGGATTCTAAATATAATAATGGTGTGAAGGATAATAATGGAGGTCCCAAACAAATTCAGAATGGATTAGTGGCAAAACTTTAA 2262 0.431 MATTPQKTTPIPDWNLDHPPKNLSVPITQQQSSINAPPPSLPQGITALTRPQSSHPLDPLSAAEITVAVATVRAAGATPELRDSMRFIEVVLLEPDKNVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPRCARLVVYNKRTNETSIWVVELSEVHAVTRGGHHRGKVISSHVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDMDLVMVDAWCVGNYSEADAPSRRLAKPLIFCRAESDCPMENGYARPVDGIYVLVDMQNMVVIEFEDRKLVPLPPVDPLRNYTPGGTRGGVDRSDVKPLQIIQPEGPSFRVNGHYIEWQKWNFRIGFTPREGLVIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLSASFICTVANYEYGFFWHFYQDGRIEAEVKLTGILSLGALLPGEFRKYGTMIAPGLYAPVHQHFFVARMDMAVDSKPGDALNQVVEINVKVEEPGENNVHNNAFYAEETLLRSELEAMRDCNPLTARHWIVRNTRTGNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLKHNLWVTSYSRDEMFPGGEFPNQNPRVGEGLATWVKQNRPLEESDIVLWYVFGITHVPRLEDWPVMPVEHIGFVLVPHGFFNCSPAVDVPPSQCEMDSKYNNGVKDNNGGPKQIQNGLVAKL* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1953 753 Gene3D - 185 287 - -
Lan1g1953 753 Pfam Copper amine oxidase, N2 domain 55 140 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lan1g1953 753 Pfam Copper amine oxidase, enzyme domain 309 717 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lan1g1953 753 Gene3D Copper amine oxidase, catalytic domain 298 722 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lan1g1953 753 Gene3D - 43 182 - -
Lan1g1953 753 Pfam Copper amine oxidase, N3 domain 180 283 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lan1g1953 753 PANTHER COPPER AMINE OXIDASE 43 740 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lan1g1953 753 SUPERFAMILY Amine oxidase N-terminal region 179 295 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lan1g1953 753 MobiDBLite consensus disorder prediction 1 21 - -
Lan1g1953 753 SUPERFAMILY Amine oxidase N-terminal region 53 181 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lan1g1953 753 PANTHER AMINE OXIDASE 43 740 - -
Lan1g1953 753 SUPERFAMILY Amine oxidase catalytic domain 303 722 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1953 Lan-Chr1 34785327 34791973 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1953 K00276 - gmx:100798722 1340.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1953 1 34785327 34791973 Lan15g0621 15 14027256 14034216 PCT
Lan15g0621 15 14027256 14034216 Lan1g1953 1 34785327 34791973 PCT