Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1928 ATGGCAATGGCAACAATGAGAAAGATTATTCCAAAGAGCCCAGAAGCGAAGCTTGGGATGAGAGTGGGTGATTTGTGGGATGTTCAGGAACCACAGCTAAGTCCTACTGAGAAGCTTAATGCTTGTTTTGAAAGCATACCTGTTTCTGCGTTTCCTTTAGCCCCTTCAAACCAAGAAATTGAGATAAAATCAGACGCCACTCTAGCTGAGGCTGTTAAAATACTGGCACATCACAATGTTCTCAGCGCACCTGTGGTGAATGTTGATGCACCTGAAGATGCTAGTTGGATTGACAGATATATCGGGATAGTCGAGTTTGCTGGAATTGTTGTATGGATTCTGCATCAGTCTGAACCTTCAACTCCTAAGAGTCCATCAACTCCAACAAGTGCAAGTGCTATTGCAGCTGCAGCTAATGGAATAACCTTTGCTTTAGAGCTAGAAGCCTTAGGCCTTGGATCTGCTGCAACAACTTCAGGGGACTTTTTCGAGGATCTCACTTCTTCTGAGCTTTATAAGAATACCAAGGTTCGTGATATTTCAGGGACGTTCCGCTGGGCGCCATTCCTTGCTTTAGAGAGATCAAACTCATTTCTAACCATGCTCTTGCTGCTTTCCAAGTACAAGATGAAGGGTGTTCCGGTGGTAGATTTAGGTGCCGGTAGAATTGATAACATCATTACACAGTCTGCTGTGATTCATATGTTGGCTGAATGTGCTGGCCTTCAGTGGTTCGAAAGTTGGGGAACCAAGGAACTATCCGAACTTGGTCTTCCCTTGGTGCCACCAAATCATATCATCAAGGTTTGTGAGGATGAACCAGTCCTTCAAGCGTTTAAACTAATGAGGAAAAAGAGGGTTGGAGGGGTACCTATAATCGAGAAAGGCGGCAGCAAGCCAGTTGGTAATATAAGTTTGCGAGATGTTCAGTTTTTGCTAACTGCTCCAGAAATCTACCATGATTATAGAACTATTAAAGTGAAGGACTTCCTCTCAGCAGTTAGAAGCTACTTAGAAAAGAATCAGAAGGCCTTCCCAAAGTTAACTGAATATATAACATGCAAAAAAGACTGCACTGTCAAAGAATTGATTCAATTATTTGACCAAGAGAAGATTAACAGGGTTTATGTTGTGGATGATGATGGAAATCTGCAAGGACTGATCACACTAAGAGATGTCATCTCAAGGCTAGTACATGAGCCGCGTGGCTATTTTGGCGATTTCTTCGATGGCGTTCTCCCGCTGCCTGCAAACTGCAGGGTTTAA 1266 0.4329 MAMATMRKIIPKSPEAKLGMRVGDLWDVQEPQLSPTEKLNACFESIPVSAFPLAPSNQEIEIKSDATLAEAVKILAHHNVLSAPVVNVDAPEDASWIDRYIGIVEFAGIVVWILHQSEPSTPKSPSTPTSASAIAAAANGITFALELEALGLGSAATTSGDFFEDLTSSELYKNTKVRDISGTFRWAPFLALERSNSFLTMLLLLSKYKMKGVPVVDLGAGRIDNIITQSAVIHMLAECAGLQWFESWGTKELSELGLPLVPPNHIIKVCEDEPVLQAFKLMRKKRVGGVPIIEKGGSKPVGNISLRDVQFLLTAPEIYHDYRTIKVKDFLSAVRSYLEKNQKAFPKLTEYITCKKDCTVKELIQLFDQEKINRVYVVDDDGNLQGLITLRDVISRLVHEPRGYFGDFFDGVLPLPANCRV* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1928 421 ProSiteProfiles CBS domain profile. 55 120 IPR000644 -
Lan1g1928 421 ProSiteProfiles CBS domain profile. 260 322 IPR000644 -
Lan1g1928 421 CDD CBS_pair_SF 202 309 - -
Lan1g1928 421 ProSiteProfiles CBS domain profile. 347 405 IPR000644 -
Lan1g1928 421 Gene3D - 250 400 IPR046342 -
Lan1g1928 421 CDD CBS_pair_SF 265 394 - -
Lan1g1928 421 Pfam CBS domain 266 309 IPR000644 -
Lan1g1928 421 Pfam CBS domain 60 105 IPR000644 -
Lan1g1928 421 Pfam CBS domain 349 398 IPR000644 -
Lan1g1928 421 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 8 421 - -
Lan1g1928 421 CDD CBS_pair_SF 62 233 - -
Lan1g1928 421 SUPERFAMILY CBS-domain pair 31 237 IPR046342 -
Lan1g1928 421 SMART cbs_1 265 314 IPR000644 -
Lan1g1928 421 SMART cbs_1 350 398 IPR000644 -
Lan1g1928 421 SMART cbs_1 58 114 IPR000644 -
Lan1g1928 421 SMART cbs_1 188 237 IPR000644 -
Lan1g1928 421 Gene3D - 40 243 IPR046342 -
Lan1g1928 421 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1-RELATED 8 421 - -
Lan1g1928 421 SUPERFAMILY CBS-domain pair 264 407 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1928 Lan-Chr1 34544743 34547123 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1928 - - gmx:100818156 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1928 1 34544743 34547123 Lan15g0446 15 10288034 10291706 PCT
Lan15g0446 15 10288034 10291706 Lan1g1928 1 34544743 34547123 PCT