Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1899 ATGTCTGGTGCTATAGACATGGACCACGTGGGGTTTTCTAAATCCACGGCGGCTCCGGCCGCCAGCCACGGCAAGAAAACGGGTCCGGTTTCAATGGATCATGTGTTACTTGCGTTGCGCGAGACGAAAGAAGAGAGGGATATTCGAATTCGGAGTTTGTTCAATTTCTTTGATGCTGTCAACAATGGATACTTGGATTATGCTCAAATTGAAGCAGGGTTGTCTGCACTGCAGATACCCCCTGAGTATAAGTATGCTAAAGAGTTGTTCAAGGTGTGTGATGCTGACAGGGATGGGAGGATTGATTATGGCGATTTTCGGCGATATATGGATGATAAGGAGTTGGAACTTTACCGAATTTTTCAAGCTATTGATGTGGAACACAATGGCTGCATTCTACCAGAAGAGCTTTGGGATGCACTTGTTAAGGCTGGGATTGAAATGGATGAGGAGGAGCTTGCTCGCTTTGTAGAGCATGTTGATAAGGATAATAACGGGATCATCACTTTTGAAGAATGGAGAGATTTTCTGCTACTTTATCCTCATGAAGCAACTATAGAGAATATATATCATCATTGGGAGAGGGTGTGCCTCGTAGACATTGGAGAACAAGCCGTCATTCCCGAAGGTATCAGCAAGCATGTGCACAGGAGCAGATATTTTATTGCAGGGGGGATTGCTGGAGCTGCTTCTCGCACAGCAACTGCTCCTCTTGATCGTCTCAAGGTGGTGTTACAAGTTCAATCTGAGCGTGCTTTTATTATGCCAGCCGTAATGAAGATATGGAAACAAGATGGTTTATTAGGGTTTTTCCGTGGTAATGGATTAAATGTTGTGAAGGTAGCACCAGAAAGTGCTATCAAGTTTTATGCTTATGAAATGCTGAAAAATGTAATTGGAGAGGCTCAAGGGAACAAGTCCGCAGATATTGGTACTGCTGGAAGACTAGTTGCAGGTGGTATGGCTGGTGCGGTTGCACAGATGGCTATATATCCGATGGATCTTATTAAAACTAGGTTACAGACTTCTGCTTGTGATGGTGGAAGGGTTCCGAAGCTGGGAAGACTTACAAAGGATATATGGGTTCAAGAGGGACCACGGGCTTTCTACAGAGGGCTTGTTCCGTCTCTTCTCGTACAACTGGGATGTGGGACTATCTCAGGAGCTGTTGGAGCTACCTGTGTCTATCCGCTGCAGGTTATCCGTACAAGATTGCAGGCACAACCCCGCAACTCTTCAAATGCTTACAAGGGAATGTCTGATGTATTTTGGAAAACTCTTAAAGATGAAGGCTTCAGAGGTTTCTACAAAGGACTCATTCCAAATCTCCTCAAAGTTGTGCCGGCTGCAAGCATTACTTATATGGTCTACGAAAATATGAAGAAGAATCTCGATCTAGATTAG 1404 0.4452 MSGAIDMDHVGFSKSTAAPAASHGKKTGPVSMDHVLLALRETKEERDIRIRSLFNFFDAVNNGYLDYAQIEAGLSALQIPPEYKYAKELFKVCDADRDGRIDYGDFRRYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEMDEEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKHVHRSRYFIAGGIAGAASRTATAPLDRLKVVLQVQSERAFIMPAVMKIWKQDGLLGFFRGNGLNVVKVAPESAIKFYAYEMLKNVIGEAQGNKSADIGTAGRLVAGGMAGAVAQMAIYPMDLIKTRLQTSACDGGRVPKLGRLTKDIWVQEGPRAFYRGLVPSLLVQLGCGTISGAVGATCVYPLQVIRTRLQAQPRNSSNAYKGMSDVFWKTLKDEGFRGFYKGLIPNLLKVVPAASITYMVYENMKKNLDLD* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1899 467 PANTHER SOLUTE CARRIER FAMILY 25 378 465 - -
Lan1g1899 467 PANTHER SOLUTE CARRIER FAMILY 25 59 378 - -
Lan1g1899 467 ProSiteProfiles EF-hand calcium-binding domain profile. 45 80 IPR002048 GO:0005509
Lan1g1899 467 ProSitePatterns EF-hand calcium-binding domain. 94 106 IPR018247 -
Lan1g1899 467 ProSiteProfiles EF-hand calcium-binding domain profile. 117 147 IPR002048 GO:0005509
Lan1g1899 467 Pfam EF-hand domain pair 116 175 IPR002048 GO:0005509
Lan1g1899 467 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 59 378 - -
Lan1g1899 467 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 378 465 - -
Lan1g1899 467 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Lan1g1899 467 SUPERFAMILY EF-hand 35 214 IPR011992 -
Lan1g1899 467 ProSiteProfiles EF-hand calcium-binding domain profile. 81 116 IPR002048 GO:0005509
Lan1g1899 467 SMART efh_1 49 77 IPR002048 GO:0005509
Lan1g1899 467 SMART efh_1 116 144 IPR002048 GO:0005509
Lan1g1899 467 SMART efh_1 85 113 IPR002048 GO:0005509
Lan1g1899 467 SMART efh_1 152 180 IPR002048 GO:0005509
Lan1g1899 467 ProSiteProfiles Solute carrier (Solcar) repeat profile. 375 463 IPR018108 -
Lan1g1899 467 Gene3D Mitochondrial carrier domain 211 378 IPR023395 -
Lan1g1899 467 Gene3D - 128 203 - -
Lan1g1899 467 Pfam EF-hand domain pair 87 112 IPR002048 GO:0005509
Lan1g1899 467 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Lan1g1899 467 Gene3D Mitochondrial carrier domain 379 466 IPR023395 -
Lan1g1899 467 SUPERFAMILY Mitochondrial carrier 214 459 IPR023395 -
Lan1g1899 467 ProSiteProfiles Solute carrier (Solcar) repeat profile. 215 298 IPR018108 -
Lan1g1899 467 Pfam Mitochondrial carrier protein 378 464 IPR018108 -
Lan1g1899 467 Pfam Mitochondrial carrier protein 310 379 IPR018108 -
Lan1g1899 467 Pfam Mitochondrial carrier protein 218 300 IPR018108 -
Lan1g1899 467 Gene3D - 21 116 - -
Lan1g1899 467 PRINTS Mitochondrial carrier protein signature 220 233 IPR002067 GO:0055085
Lan1g1899 467 PRINTS Mitochondrial carrier protein signature 233 247 IPR002067 GO:0055085
Lan1g1899 467 PRINTS Mitochondrial carrier protein signature 273 293 IPR002067 GO:0055085
Lan1g1899 467 PRINTS Mitochondrial carrier protein signature 325 343 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1899 Lan-Chr1 34209045 34212061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1899 9 467 EF-hand Containing Proteins AT5G51050 70.341 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1899 K14684 - gmx:100791305 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0733 12 14547593 14551061 Lan1g1899 1 34209045 34212061 LSH
Lan1g1899 1 34209045 34212061 Lan1g1511 1 25528571 25531123 LSH