Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0733 ATGTCTGGTGCCATAGACATGGACCATGTGGGGTTTTCAAAAGCCAAATCCACGGCGGCTCCGGCCGCCGGTCACGGCAAGAAAACGGCCCCGGTTTCAATGGATCACGTGCTACTTGCATTGCGCGAGACGAAAGAAGAGAGGGATCTTCGAATCCGTAGTTTGTTCAATTTCTTTGATGCTGCAAATAATGGGTACTTGGACTATGCTCAAATTGAAGCAGGGTTATCTGCACTGCAGATACCTCCTGAGTATAAGTATGCTAAGGAACTGTTCAAGGTGTGTGATGCTGACAGAGATGGGAGGATCGATTATGGTGATTTTCGACGATATATGGATGATAAGGAGTTGGAACTTTACCGAATTTTTCAGGCTATTGATGTCGAACACAGTGGCTGCATTCTACCTGAAGAGCTTTGGGATGCACTTGTTAAGGCTGGGATTGAAATGGATGAGGAGGAGCTTGCCCGCTTTGTAGAGCATGTTGATAAGGATAATAATGGGATCATTACCTTTGAAGAATGGAGAGATTTTCTGCTACTTTATCCTCATGAAGCAACTATTGAAAATATATATCATCATTGGGAGAGGGTGTGCCTTGTAGACATTGGGGAACAAGCAGTCATTCCTGAAGGGATTAGCAAGCATGTTCACAGGAGCAGATACTTTATTGCTGGCGCGATAGCCGGAGCTGCTTCTCGCACAGCAACTGCTCCTCTTGACCGTCTCAAGGTAGTTTTACAAGTTCAGACTGGAAACGCTTCTATTATGTCAGCTGTAATGAAGATATGGAAGCAAGATGGTTTATTAGGGTTTTTCCGTGGTAATGGATTAAATGTTGTGAAGGTAGCACCAGAAAGTGCTATCAAGTTTTATGCTTATGAAATGCTGAAAAATGTAATTGGAGAGGCTCAAGGGAACAATTCAGCAGATATTGGTACTGCTGGGAGACTATTTGCAGGTGGTATGGCTGGTGCGGTTGCACAGATGGCTATATATCCGATGGATCTTATTAAAACTAGGTTACAGACTTGTGCTTCTGACGATGGAAGGGTTCCCAAGCTGAGCAGACTTGCAAAGGATATATGGGTTCACGAGGGACCACGTGCTTTCTACAGAGGGCTTGTTCCATCTCTTCTCGGTATGATTCCTTATGCAGGCATTGATCTCACTGCTTATGACACCTTGAAAGATATGTCAAAGAGATATCTTCTTGACAGCGAACCCGGTCCTCTAGTACAACTGGGATGCGGGACAATCTCAGGAGCTGTTGGAGCTACCTGTGTCTATCCGCTGCAGGTTATTCGTACAAGACTGCAGGCACAGCCCTGCAACTCTTCCACTGCTTACAAGGGAATGTCTGATGTGTTTTGGAAAACTCTTAAGGATGAAGGATTCAGAGGTTTCTACAAGGGACTTGTTCCAAATCTCCTCAAAGTTGTGCCTGCTGCAAGCATTACTTATATGGTCTATGAAAGTATGAAGAAGAATCTAGATCTAGATTAG 1506 0.4449 MSGAIDMDHVGFSKAKSTAAPAAGHGKKTAPVSMDHVLLALRETKEERDLRIRSLFNFFDAANNGYLDYAQIEAGLSALQIPPEYKYAKELFKVCDADRDGRIDYGDFRRYMDDKELELYRIFQAIDVEHSGCILPEELWDALVKAGIEMDEEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKHVHRSRYFIAGAIAGAASRTATAPLDRLKVVLQVQTGNASIMSAVMKIWKQDGLLGFFRGNGLNVVKVAPESAIKFYAYEMLKNVIGEAQGNNSADIGTAGRLFAGGMAGAVAQMAIYPMDLIKTRLQTCASDDGRVPKLSRLAKDIWVHEGPRAFYRGLVPSLLGMIPYAGIDLTAYDTLKDMSKRYLLDSEPGPLVQLGCGTISGAVGATCVYPLQVIRTRLQAQPCNSSTAYKGMSDVFWKTLKDEGFRGFYKGLVPNLLKVVPAASITYMVYESMKKNLDLD* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0733 501 PANTHER SOLUTE CARRIER FAMILY 25 60 499 - -
Lan12g0733 501 Gene3D - 16 118 - -
Lan12g0733 501 ProSiteProfiles EF-hand calcium-binding domain profile. 150 185 IPR002048 GO:0005509
Lan12g0733 501 ProSiteProfiles EF-hand calcium-binding domain profile. 119 149 IPR002048 GO:0005509
Lan12g0733 501 ProSiteProfiles Solute carrier (Solcar) repeat profile. 312 399 IPR018108 -
Lan12g0733 501 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Lan12g0733 501 ProSiteProfiles Solute carrier (Solcar) repeat profile. 409 497 IPR018108 -
Lan12g0733 501 ProSitePatterns EF-hand calcium-binding domain. 163 175 IPR018247 -
Lan12g0733 501 ProSiteProfiles Solute carrier (Solcar) repeat profile. 217 300 IPR018108 -
Lan12g0733 501 SUPERFAMILY Mitochondrial carrier 216 492 IPR023395 -
Lan12g0733 501 Pfam EF-hand domain pair 118 177 IPR002048 GO:0005509
Lan12g0733 501 ProSiteProfiles EF-hand calcium-binding domain profile. 47 82 IPR002048 GO:0005509
Lan12g0733 501 Pfam Mitochondrial carrier protein 312 401 IPR018108 -
Lan12g0733 501 Pfam Mitochondrial carrier protein 220 302 IPR018108 -
Lan12g0733 501 Pfam Mitochondrial carrier protein 410 498 IPR018108 -
Lan12g0733 501 Gene3D Mitochondrial carrier domain 213 499 IPR023395 -
Lan12g0733 501 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Lan12g0733 501 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 60 499 - -
Lan12g0733 501 SMART efh_1 118 146 IPR002048 GO:0005509
Lan12g0733 501 SMART efh_1 51 79 IPR002048 GO:0005509
Lan12g0733 501 SMART efh_1 87 115 IPR002048 GO:0005509
Lan12g0733 501 SMART efh_1 154 182 IPR002048 GO:0005509
Lan12g0733 501 SUPERFAMILY EF-hand 37 216 IPR011992 -
Lan12g0733 501 Pfam EF-hand domain pair 89 114 IPR002048 GO:0005509
Lan12g0733 501 PRINTS Mitochondrial carrier protein signature 222 235 IPR002067 GO:0055085
Lan12g0733 501 PRINTS Mitochondrial carrier protein signature 235 249 IPR002067 GO:0055085
Lan12g0733 501 PRINTS Mitochondrial carrier protein signature 275 295 IPR002067 GO:0055085
Lan12g0733 501 PRINTS Mitochondrial carrier protein signature 327 345 IPR002067 GO:0055085
Lan12g0733 501 PRINTS Mitochondrial carrier protein signature 372 390 IPR002067 GO:0055085
Lan12g0733 501 PRINTS Mitochondrial carrier protein signature 418 440 IPR002067 GO:0055085
Lan12g0733 501 Gene3D - 130 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0733 Lan-Chr12 14547593 14551061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0733 9 501 EF-hand Containing Proteins AT5G51050 74.950 0.0 767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0733 K14684 - gmx:100791305 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0733 12 14547593 14551061 Lan1g1899 1 34209045 34212061 LSH
Lan12g0733 12 14547593 14551061 Lan1g1511 1 25528571 25531123 LSH