Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1462 ATGGAAGGCGTGGCAGTGTTAGGTGGAAATGTCTCATCTTCTCTTTTTCTTCGTTCACCACCATCTAAGACCACAACTACCATCATACGCGCCACGCGCCACCACCAACAACCCTTAACAGCGTTCCCTTCAAAATCCCATCTTTTCTATTCTTCTACCTCTCGTCCATTCCCTAAAACCCGATGCACCAATCAATCCACCAATGGCACCTTCCTTCCCCACGTAATTGCTTCTCTGGAACAAGTTGACCAAACTTATATAATGGTGAAACCTGATGGTGTGCAACGTGGCCTTGTGGGAGAAATTATTACTAGGTTTGAGAAGAAGGGGTTTAAGTTAACTGGCTTGAAGCTCTTTCAGTGTTCTAAAGATTTAGCTGAGGAGCATTACAAGGACTTGAAAGGAAAGTCATTCTTCCCTAAGTTGATTGACTATGTTACTTCAGGTCCTGTTGTGTGTATGGCTTGGGAGGGTGTTGGAGTTGTGGCATCAGCACGTAAGCTTATAGGCTCTACAGATCCTCTTAAAGCTGAACCGGGCACAATAAGAGGAGATCTTGCTGTTCAAACCGGAAGGAATGTTGTTCATGGCAGTGACAGCCCTGAGAATGGCAAGCGTGAGATAGGTCTATGGTTCAACGAAGCCGAAATAGTCCAATGGACACCTGCCCAAGCAGCATGGCTTAGAGAATAA 693 0.456 MEGVAVLGGNVSSSLFLRSPPSKTTTTIIRATRHHQQPLTAFPSKSHLFYSSTSRPFPKTRCTNQSTNGTFLPHVIASLEQVDQTYIMVKPDGVQRGLVGEIITRFEKKGFKLTGLKLFQCSKDLAEEHYKDLKGKSFFPKLIDYVTSGPVVCMAWEGVGVVASARKLIGSTDPLKAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFNEAEIVQWTPAQAAWLRE* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1462 230 Hamap Nucleoside diphosphate kinase [ndk]. 82 217 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lan1g1462 230 Pfam Nucleoside diphosphate kinase 84 217 IPR034907 -
Lan1g1462 230 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 30 229 - -
Lan1g1462 230 SUPERFAMILY Nucleoside diphosphate kinase, NDK 82 228 IPR036850 -
Lan1g1462 230 PRINTS Nucleoside diphosphate kinase signature 85 107 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lan1g1462 230 PRINTS Nucleoside diphosphate kinase signature 129 148 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lan1g1462 230 PRINTS Nucleoside diphosphate kinase signature 149 166 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lan1g1462 230 PRINTS Nucleoside diphosphate kinase signature 170 186 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lan1g1462 230 PRINTS Nucleoside diphosphate kinase signature 193 212 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lan1g1462 230 SMART ndk_5 82 219 IPR034907 -
Lan1g1462 230 CDD NDPk_I 84 212 - -
Lan1g1462 230 Gene3D - 78 230 IPR036850 -
Lan1g1462 230 ProSitePatterns Nucleoside diphosphate kinases active site. 193 201 IPR023005 -
Lan1g1462 230 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE II, CHLOROPLASTIC 30 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1462 Lan-Chr1 24631122 24634278 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1462 K00940 - jre:108986589 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1462 1 24631122 24634278 Lan1g1462 1 24631122 24634278 ECH
Lan12g0789 12 15100349 15102694 Lan1g1462 1 24631122 24634278 LSH
Lan1g1462 1 24631122 24634278 Lan6g0574 6 5053371 5057497 PCT