Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0789 ATGGAAAGCGTAGCAGTGTTAGGTGGAAATGTCTCATCCTTTCTTCTTCTCCCCTCACCACCAACCAAGAGAACCACCACCATGATACGCGCCACGCGCCACCACCAACACTTAACCGCGTTTCCTTCCAAATCACACCTTTTCTATTCTTCTACTTCTCGTACCTTTCCTAAAACCCGATGCTCCAATCAATCCAGCAATGGCATCTTCCTTCCCCACTTAATTGCCTCTCTGGAACAAGTTGATCAAACTTATATTATGGTGAAACCCGATGGTGTTCAACGTGGACTTGTTGGAGAAATTATTACTAGGTTTGAGAAGAAGGGGTTTAAGTTAACTGGCTTGAAGCTCTTCAAGTGCTCAAAGGACTTAGCAGAGGAGCATTACAAGGATTTGAAAGGAAAGTCATTTTTCCCTAAGCTGATTGATTACATTACTTCAGGACCTGTTGTTTGTATGGCTTGGGAGGGTGTTGGGGTTGTGGCATCAGCACGTAAGCTGATCGGGTCTACAGATCCTCTTCAAGCTGAGCCGGGCACAATAAGAGGAGATCTTGCTGTTCAAACTGGAAGGAATATTGTTCATGGTAGTGACAGCCCTGATAATGGCAAGCGTGAAATAGGTTTATGGTTCAACGAAGCTGAATTAGTTCACTGGACTCCTGCCCAAGCAGCATGGCTTAGAGAATAA 690 0.4493 MESVAVLGGNVSSFLLLPSPPTKRTTTMIRATRHHQHLTAFPSKSHLFYSSTSRTFPKTRCSNQSSNGIFLPHLIASLEQVDQTYIMVKPDGVQRGLVGEIITRFEKKGFKLTGLKLFKCSKDLAEEHYKDLKGKSFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPDNGKREIGLWFNEAELVHWTPAQAAWLRE* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0789 229 SUPERFAMILY Nucleoside diphosphate kinase, NDK 81 227 IPR036850 -
Lan12g0789 229 Pfam Nucleoside diphosphate kinase 83 215 IPR034907 -
Lan12g0789 229 PRINTS Nucleoside diphosphate kinase signature 84 106 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lan12g0789 229 PRINTS Nucleoside diphosphate kinase signature 128 147 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lan12g0789 229 PRINTS Nucleoside diphosphate kinase signature 148 165 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lan12g0789 229 PRINTS Nucleoside diphosphate kinase signature 169 185 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lan12g0789 229 PRINTS Nucleoside diphosphate kinase signature 192 211 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lan12g0789 229 CDD NDPk_I 83 211 - -
Lan12g0789 229 Gene3D - 77 229 IPR036850 -
Lan12g0789 229 ProSitePatterns Nucleoside diphosphate kinases active site. 192 200 IPR023005 -
Lan12g0789 229 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 26 228 - -
Lan12g0789 229 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE II, CHLOROPLASTIC 26 228 - -
Lan12g0789 229 Hamap Nucleoside diphosphate kinase [ndk]. 81 216 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lan12g0789 229 SMART ndk_5 81 218 IPR034907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0789 Lan-Chr12 15100349 15102694 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0789 K00940 - pop:7458369 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0789 12 15100349 15102694 Lan1g1462 1 24631122 24634278 LSH
Lan12g0789 12 15100349 15102694 Lan6g0574 6 5053371 5057497 PCT