Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1426 ATGAAGGCAACATTGAGGTACTTAGCAGGAATTACAGGCCCTAGTGGCTTTGGCTCTAATTCAACTGCAGAACATGTTACTCAACATTGCTTTTCCCTCCTTCCCTCTAATCTAACGGCTCTCATCACTGGTGCATCTTCTGGTATTGGAGCTGAAACAGCTAGGGTGTTAGCAAAGAGAGGGGTGAGAGTTGTGATTGGTGGGAGGGATTTGAAGAAGGCAAATGAAGTGAGAGAGAATATCCTAAAGGAAAATCCAGAAGCTGAGATTCTTCTTTTGGAAATTGATCTTAGCTCTTTTGCTTCTATACAGATATTTTGTTCAGAGTTCTTAGCTTTAGAACTGCCTCTTAATATTCTTATAAATAATGCAGGAATTTACTCTCCAAACTTGGAGTTCTCCGAAGAGAAAATTGAAATGACATTTGCTACAAATTATTTAGGACATTTTTTGTTAACGAATATGCTACTTGAGAAAATGATAGATACAGCAAAGGACACAGGTATTCAAGGAAGAATAATAAACGTTTCTTCTGAAGTCCATAGCTGGGTGAGAGGTGCAGATTCTTTTCATTTCAACGACATGGTCACAGGAAAAAATTATAATGGCACACATGCATATGCTCAATCAAAATTGGCCAATATTTTGCATGTGAAGGAAATGGCCCGACAGCTTAAGGCAAGGAATGCAAGAGTAACTATCAATGCAGTACATCCAGGCATTGTGAAGACAGAAATTATTAGAGCTCGCAAGGGCTTAATAACTGAATCCGTTTTTTTCATTGCATCAAAGTTCCTCAAATCAACTTCACAGGGTGCATCAACAACATGTTATGTTGCTCTAAGTCCACAAACAAAAGGGGTGAGTGGGAAATACTTTACAGATTGTAACGAGAGTAATTGCTCAGGTCTAGCAAATGATGAATTGGAAGCTCAAAAGCTATGGAACAATACCCATGCCTTGCTTCACAAACAACTAAGTCAAGCATAA 990 0.3869 MKATLRYLAGITGPSGFGSNSTAEHVTQHCFSLLPSNLTALITGASSGIGAETARVLAKRGVRVVIGGRDLKKANEVRENILKENPEAEILLLEIDLSSFASIQIFCSEFLALELPLNILINNAGIYSPNLEFSEEKIEMTFATNYLGHFLLTNMLLEKMIDTAKDTGIQGRIINVSSEVHSWVRGADSFHFNDMVTGKNYNGTHAYAQSKLANILHVKEMARQLKARNARVTINAVHPGIVKTEIIRARKGLITESVFFIASKFLKSTSQGASTTCYVALSPQTKGVSGKYFTDCNESNCSGLANDELEAQKLWNNTHALLHKQLSQA* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1426 329 Gene3D - 31 327 - -
Lan1g1426 329 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Lan1g1426 329 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Lan1g1426 329 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 207 226 IPR002347 -
Lan1g1426 329 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 326 - -
Lan1g1426 329 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 299 IPR036291 -
Lan1g1426 329 PANTHER RETINOL DEHYDROGENASE 4 326 - -
Lan1g1426 329 CDD retinol-DH_like_SDR_c_like 39 315 - -
Lan1g1426 329 Pfam short chain dehydrogenase 199 248 IPR002347 -
Lan1g1426 329 Pfam short chain dehydrogenase 39 179 IPR002347 -
Lan1g1426 329 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Lan1g1426 329 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Lan1g1426 329 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Lan1g1426 329 PRINTS Glucose/ribitol dehydrogenase family signature 207 226 IPR002347 -
Lan1g1426 329 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1426 Lan-Chr1 24022744 24027057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1426 39 259 Acyl Lipid Metabolism Gene Families AT3G46170 30.088 1.08e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1426 - - gmx:100776567 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1426 1 24022744 24027057 Lan1g1426 1 24022744 24027057 ECH
Lan12g0821 12 15349832 15353278 Lan1g1426 1 24022744 24027057 LSH
Lan1g1426 1 24022744 24027057 Lan15g0627 15 14237848 14243532 PCT
Lan15g0627 15 14237848 14243532 Lan1g1426 1 24022744 24027057 PCT