Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0821 ATGAAGGCAACACTAAGGTACTTAACAGGAATTGCAGGACCTAGTGGCTTTGGCTCTAATTCAACTGCAGAACAAGTCACTCAACATTGCTTTTCTTTCCTTCCTTCTCATCTAACCGCTATCATCACCGGTGGTTCTTCTGGTATTGGAGCTGAAACAGCGAGGGTGCTAGCAAAGAGAGGTGTGAGAGTTGTAATAGCTGCGAGAGATTTGAAGAAAGCGAGTGAAGTGAGAGAGAATATCCAAAAGGAGAGTCCAAAATCTGAGATTCTTCTTTTGGAAATTGATCTTAGCTCTTTTGCTTCTGTACAGAGATTTTGTTCTGAGTTCTTAGCTTCAGAATTGCCCCTTAATATTCTTATAAATAATGCAGGAATTTACTCTCCAAACTTGGAATTCTCAGAAGAGAAAATTGAAATGACATTTGCTACAAATTATGTAGGACATTTTTTGTTAACGAAGATGCTACTAGAGAAGATGATAGATACTGCAAAGAATACAGGTACTCGAGGAAAAATAATAAACGTTTCTTCTGAAGTCCATAGCTGGGTGAGAGGTTCTAGCTTTCATTTCAACGACATGGTCAGCGGAAAAAATTATAATGGCACACGCGCATATGCTCAATCAAAATTGGCCAATATTCTGCATGTGAAGGAAATGGACAGAAAGCTTAAGACAAGGAATGCAAGAGTAACTATCAATGCAGTGCATCCAGGCATTGCGAAGACAGAAATTATTAGAGCTCACAAGGGCCTAATAACTGACTCTGTGTTTTTCATTGTATCGAAGTTACTCAAATCAGCTTCACAGGGTGCATCGACGACGTGTTATGTTGCTCTAAGTCCACAAACAGAAGGGGTGAGTGGGAAATACTTTACAGATTGTAACGAGAATAACTGCTGGGGTCTAGCAAATGATGAATTGGAAGCTCAAAAGCTATGGAACAATACCCATGCCTTGCTTCACAGACAACCACATCAAACAGCAAGTTAA 993 0.3978 MKATLRYLTGIAGPSGFGSNSTAEQVTQHCFSFLPSHLTAIITGGSSGIGAETARVLAKRGVRVVIAARDLKKASEVRENIQKESPKSEILLLEIDLSSFASVQRFCSEFLASELPLNILINNAGIYSPNLEFSEEKIEMTFATNYVGHFLLTKMLLEKMIDTAKNTGTRGKIINVSSEVHSWVRGSSFHFNDMVSGKNYNGTRAYAQSKLANILHVKEMDRKLKTRNARVTINAVHPGIAKTEIIRAHKGLITDSVFFIVSKLLKSASQGASTTCYVALSPQTEGVSGKYFTDCNENNCWGLANDELEAQKLWNNTHALLHRQPHQTAS* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0821 330 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 326 - -
Lan12g0821 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 298 IPR036291 -
Lan12g0821 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
Lan12g0821 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Lan12g0821 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Lan12g0821 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Lan12g0821 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Lan12g0821 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Lan12g0821 330 Pfam short chain dehydrogenase 39 179 IPR002347 -
Lan12g0821 330 PANTHER RETINOL DEHYDROGENASE 4 326 - -
Lan12g0821 330 Gene3D - 36 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0821 Lan-Chr12 15349832 15353278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0821 39 245 Acyl Lipid Metabolism Gene Families AT1G63380 30.841 1.20e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0821 - K11153 gmx:100819058 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0821 12 15349832 15353278 Lan1g1426 1 24022744 24027057 LSH
Lan12g0821 12 15349832 15353278 Lan15g0627 15 14237848 14243532 PCT
Lan15g0627 15 14237848 14243532 Lan12g0821 12 15349832 15353278 PCT