Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0906 ATGGCGATGATGTTGTTTGGTGCTGTTACTCCATTCATTAAGCTTTCTTCTTCTTCTTCTTCTCCATTTCTACTTCATTCAATTACAACAACAACAAGAAGAAGAAGATCCTTTTCAGTAACTGCTCTTTCATCTTCCTCACCCGTTCGTGTTCGTTTCGCTCCTTCTCCTACCGGTAACCTCCATGTTGGTGGTGCCAGAACTGCTTTGTTCAATTACTTGTTCGCTAGGTCTAATGGCGGGAAATTTGTTCTGAGAATTGAGGATACTGATTTGGAGAGGTCTACTCGTGAATCTGAGGAAGCTGTGCTACGAGATCTTGCTTGGCTTGGACTTGATTGGGATGAAGGTCCTGGTGTTGGTGGGGATTATGGTCCATATAGGCAGACTGAGAGGACTTCCTTGTACAAACAATATGCTGATAAACTCCATGAATCTGGTCATGTTTATCGATGCTTCTGCTCTAATGAGGAACTAGAAAAAATGAAGGAGATTGCCAAACTAAAGAACCTGCCTCCAGTATATACAGGTAAATGGGCTAGTGCAACTAATGAGGAAGTAGAAGAAGAGCTGGCAAAGGGAACTCCTTATACATACCGGTTTCGTGTCCCCGAAGGAAGTTTAAAAATTAATGATATCATACGAGGCGAAGTTAGTTGGAACTTGGATACGCTTGGAGATTTTGTGATAATGAGAAGTAATGGTCTGCCTGTTTACAACTTTTGTGTAACGGTGGATGATGCTACCATGGCTATTTCTCATGTCATCAGAGCAGAGGAGCATTTACCAAACACTCTAAGGCAGGCATTAATATATAAGGCACTAGGATTTCCCATGCCTCACTTTGCACATGTTTCCTTGATTTTAGCTCCTGATCGCAGTAAATTATCAAAACGACATGGTGCAACATCAGTGGGTCAGTTCAGGGAGATGGGATACTTACCTCAAGCAATGACGAATTACCTAGCATTATTAGGCTGGGGTGATGGGACCGAAAATGAATTTTTCACCCTTGATCAACTTGTTGATAAATTCACTATTGAACGTGTTAACAAAAGTGGTGCTGTTTTTGATTTGACGAAGTTAAGGTGGATGAATGGTCATTATTTAAGAGCACGTCCATCAGAAGAGTTGACCAACCTTATTGGAGAGCAGTGGAAGACATCTGGTTTACTTACAGTTTCGGCAGGGCCCTTTATTGACGAAGCAACTCAGCTACTTAAGGATGGGATTGACTTGAAAACTGATGCAGACAAGGCGCTTGCTAATTTGCTTTCTTATCCTTTAAATCTAACTTTAGAGAGCCAAGAAGCAGAATCTGTCTTACAAGATAATCTTTCGGAATTTTCCACCAGCCTCTTGGCTGCCTATGATAATGGTGATCTGATAGCTGCACTTGAAAGCCAAGATAGTTGGAAAAAGTGGGTCAAAGACTTTGGTAAATCACTTAAGCGTAAGGGAAAATCACTTTTCATGCCCCTCCGACTTTTGCTGACCGGAAAACTCCACGGACCTGATATGGGGGCTAGTGTTTTACTGCTACATAAAGCTGGAAAATCCGGTATCGTAGCACCTGAAGTTGGCTTTGTGACACTGGAGGAAAGATTTGAAATGCTTCGGCAAGTTAACTGGGAAACATTGTCCAAGGACCACCCTGTCAAAGAAACAGCCACTTCTGTTAATTGA 1686 0.4205 MAMMLFGAVTPFIKLSSSSSSPFLLHSITTTTRRRRSFSVTALSSSSPVRVRFAPSPTGNLHVGGARTALFNYLFARSNGGKFVLRIEDTDLERSTRESEEAVLRDLAWLGLDWDEGPGVGGDYGPYRQTERTSLYKQYADKLHESGHVYRCFCSNEELEKMKEIAKLKNLPPVYTGKWASATNEEVEEELAKGTPYTYRFRVPEGSLKINDIIRGEVSWNLDTLGDFVIMRSNGLPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFPMPHFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMTNYLALLGWGDGTENEFFTLDQLVDKFTIERVNKSGAVFDLTKLRWMNGHYLRARPSEELTNLIGEQWKTSGLLTVSAGPFIDEATQLLKDGIDLKTDADKALANLLSYPLNLTLESQEAESVLQDNLSEFSTSLLAAYDNGDLIAALESQDSWKKWVKDFGKSLKRKGKSLFMPLRLLLTGKLHGPDMGASVLLLHKAGKSGIVAPEVGFVTLEERFEMLRQVNWETLSKDHPVKETATSVN* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0906 561 TIGRFAM gltX_bact: glutamate--tRNA ligase 49 517 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Lan1g0906 561 Gene3D HUPs 41 373 IPR014729 -
Lan1g0906 561 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 55 66 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lan1g0906 561 PANTHER GLUTAMATE--TRNA LIGASE, MITOCHONDRIAL-RELATED 40 541 - -
Lan1g0906 561 Pfam Anticodon binding domain 398 516 IPR045462 -
Lan1g0906 561 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 358 516 IPR008925 GO:0000049
Lan1g0906 561 SUPERFAMILY Nucleotidylyl transferase 49 357 - -
Lan1g0906 561 Hamap Glutamate--tRNA ligase [gltX]. 48 543 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Lan1g0906 561 PANTHER GLUTAMATE--TRNA LIGASE 40 541 - -
Lan1g0906 561 PRINTS Glutamyl-tRNA synthetase signature 52 64 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Lan1g0906 561 PRINTS Glutamyl-tRNA synthetase signature 66 77 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Lan1g0906 561 PRINTS Glutamyl-tRNA synthetase signature 81 94 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Lan1g0906 561 PRINTS Glutamyl-tRNA synthetase signature 237 247 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Lan1g0906 561 PRINTS Glutamyl-tRNA synthetase signature 253 261 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Lan1g0906 561 CDD GluRS_core 49 371 IPR033910 GO:0006424|GO:0008270
Lan1g0906 561 Pfam tRNA synthetases class I (E and Q), catalytic domain 49 364 IPR020058 GO:0004812|GO:0005524|GO:0043039
Lan1g0906 561 Gene3D - 430 520 IPR020751 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0906 Lan-Chr1 19840354 19846248 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0906 K01885 - gmx:100810730 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0062 12 561112 567523 Lan1g0906 1 19840354 19846248 LSH