Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0062 ATGGCGATTACCGCATGGATGAAGAAGGTTGCTTCTACTGCTTCCTCTTCTCCATTAATGCACCATTCTTCTTATAAATTCTTCTACCGAACCTTTTCAGTCACTACTTCTCTTTCAGAACCCGTTCGTGTTCGTTTCGCACCTTCTCCTACTGGTAACCTCCATGTCGGTGGTGCCAGAACTGCTTTGTTCAATTACTTGTTCGCTAGGTCCAAAGGTGGGAAATTTGTTTTGAGAATTGAGGATACTGACTTGGAGAGGTCTACCCGGGAATCCGAGGAAGCCGTGCTTCGTGATCTTTCTTGGCTTGGCCTTGAATGGGATGAAGGTCCCGGTGTTGGTGGGGATTATGGTCCATATAGGCAGTCTGAGAGGAATTCTTTGTACAAACAATATGCTGAGAAACTCCGTGAATCTGGTCATGTTTATTGCTGCTTCTGCTCTAATGAGGAACTAGAAAAAATGAAGGTGGTTGCCAAACTAAAGAACCTGCCTCCAGTATACACAGGCAAATGGGCTAGTGCAACTAATGAGGAAGTAGAAGAAGAGCTGGCAAAAGGAACTCCTTATACATACCGGTTTCGTGTCCCTGAAGGAAGTTTAAAAATTAATGACATAATACGAGGCGAAGTTACTTGGAACTTGGCTACACTTGGAGATTTTGTGATAATGAGGAGTAATGGTCAGCCTGTTTACAACTTTTGTGTAACAGTGGATGATGCTACCATGGCTATTTCTCATGTTATCAGAGCAGAGGAGCATTTACCAAACACTCTAAGGCAGGCATTGATATACAAGGCACTAGGATTTCCCATGCCTCACTTTGCACATGTTTCCTTGATTTTAGCTCCTGATCGCAGTAAATTATCGAAACGACATGGTGCAACGTCAGTGACTCAGTTCAGGGAGATGGGATACCTACCTCAAGCAATGGTGAACTACCTAGCATTATTAGGTTGGGGTGATGGGACCGAAAATGAGTTTTTCACCCTCGATCAACTTGTTGAAAAATTCACTATTGAACGTGTTAACAAAAGTGGTGCTGTTTTTGATTCGACGAAGTTAAGGTGGATGAATGGTCATTATTTAAGAGGACATCCAGAAGAGGAGTTCACAAACCTTATTGGAGAGCACTGGAAGACATCCGGCTTACTTACAGTTTCGGCAGGGCCCTTCATCGATGATGCAGCTCAGCTACTTAAGGATGGGATTGACTTGATAACTGATGCAGAAAAGGCGCTTGTTATCTTTCTTTCTTATCCTTTAAATTTAACTTTACGGAGCCAAGATGCAGAACCGGTCTTACAAGATAATCTTTCCGAATTTTCCGCCAGCCTCTTGGGTGCCTATGAAAGTGGTGATCTGGTATCTGCACTTGAAAGCCAAGCTAGCTGGCAAAAATGGGTGAAAGAATTTGGTAAATCACGTAATCGCAAGGGAAAATCGCTTTTCATGCCCATCCGACTTTTGCTGACCGGAAAACTTCATGGACCTGATCTGGGGGCTAGTGTTTTACTTCTCCATAAAGCTGGAACTACCAGTATCTTAGCTCCTGAAGTCGGCTTCGTGACACTTGATGAAAGATTCAAAATTCTTGGGCAAATTAACTGGGAAACATTGTCCAAGGATCATCCTATCAAAGAGACAGCTACTTCTGTGTAA 1662 0.432 MAITAWMKKVASTASSSPLMHHSSYKFFYRTFSVTTSLSEPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTRESEEAVLRDLSWLGLEWDEGPGVGGDYGPYRQSERNSLYKQYAEKLRESGHVYCCFCSNEELEKMKVVAKLKNLPPVYTGKWASATNEEVEEELAKGTPYTYRFRVPEGSLKINDIIRGEVTWNLATLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFPMPHFAHVSLILAPDRSKLSKRHGATSVTQFREMGYLPQAMVNYLALLGWGDGTENEFFTLDQLVEKFTIERVNKSGAVFDSTKLRWMNGHYLRGHPEEEFTNLIGEHWKTSGLLTVSAGPFIDDAAQLLKDGIDLITDAEKALVIFLSYPLNLTLRSQDAEPVLQDNLSEFSASLLGAYESGDLVSALESQASWQKWVKEFGKSRNRKGKSLFMPIRLLLTGKLHGPDLGASVLLLHKAGTTSILAPEVGFVTLDERFKILGQINWETLSKDHPIKETATSV* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0062 553 CDD GluRS_core 42 364 IPR033910 GO:0006424|GO:0008270
Lan12g0062 553 Gene3D HUPs 33 365 IPR014729 -
Lan12g0062 553 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 48 59 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lan12g0062 553 Gene3D - 424 517 IPR020751 -
Lan12g0062 553 Hamap Glutamate--tRNA ligase [gltX]. 41 523 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Lan12g0062 553 PRINTS Glutamyl-tRNA synthetase signature 45 57 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Lan12g0062 553 PRINTS Glutamyl-tRNA synthetase signature 59 70 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Lan12g0062 553 PRINTS Glutamyl-tRNA synthetase signature 74 87 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Lan12g0062 553 PRINTS Glutamyl-tRNA synthetase signature 230 240 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Lan12g0062 553 PRINTS Glutamyl-tRNA synthetase signature 246 254 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Lan12g0062 553 SUPERFAMILY Nucleotidylyl transferase 42 350 - -
Lan12g0062 553 PANTHER GLUTAMATE--TRNA LIGASE 37 533 - -
Lan12g0062 553 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 351 510 IPR008925 GO:0000049
Lan12g0062 553 TIGRFAM gltX_bact: glutamate--tRNA ligase 42 513 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Lan12g0062 553 Pfam Anticodon binding domain 390 512 IPR045462 -
Lan12g0062 553 PANTHER GLUTAMATE--TRNA LIGASE, MITOCHONDRIAL-RELATED 37 533 - -
Lan12g0062 553 Pfam tRNA synthetases class I (E and Q), catalytic domain 42 357 IPR020058 GO:0004812|GO:0005524|GO:0043039
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0062 Lan-Chr12 561112 567523 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0062 K01885 - gmx:100787983 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0062 12 561112 567523 Lan1g0906 1 19840354 19846248 LSH