Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g1000 ATGCGCAGCTCCGAGGTGAAAAATAGGACTTCTACAGAGGACATAAAGAGTCTGAGATTGATAACTGCCATTAAAACTCCATACCTTCCTGATGGCCGATTTGATCTTGAAGCATATGACGATTTGATGAATACGCAGATTGAAAACGGAGCTGAAGGTGTTATTGTTGGTGGCACAACCGGTGAAGGTCAGTTGATGAGCTGGGATGAACACATAATGCTTATCGGGCACACAGTCAACTGTTTTGGTGGGAAAATTAAGGTTATTGGAAACACCGGAAGCAACTCGACCAGGGAAGCAATTCATGCCACTGAGCAAGGTTTTGCTGTAGGAATGCATGCTGCACTTCATATAAACCCTTACTACGGTAAAACTTCCTTGAATGGTTTGATTTCTCACTTTGACAGTGTGCTTTCCATGGGCCCCACTATTATATATAATGTGCCATCGCGAACTGGTCAAGACATTCCTCCACATATAATTCAAACCTTAGCTAAAAGTGTTAGCTTGGCTGGTGTCAAGGAATGTGTTGGAAACGACCGGATCAAGCAGTACACAGATAATGGGATTGTTGTGTGGAGTGGGAATGATGATCAATGTCATGATGCTAGATGGGGTTATGGGGCTACTGGAGTAATATCTGTTGTAAGCAACCTGGTTCCTGGTTTAATACGAGAACTCATGTTCGCTGGAAACAATCCTGCACTGAATTCTAAGCTCTTGCCTTTGATCGACTGGCTTTTCCACGAGCCAAACCCCATCGGTTTGAACACGGCTCTCGCTCAGCTTGGGGTTGTTAGGCCAGTGTTCAGGCTACCATATGTACCCCTCCGTGTGGAGAAAAGGATAGAGTTTGTCAACTTGGTGAAGAATATTGGACGCAAGCATTTTGTTGGAGAAAAAGATGTCGAGGTTCTTGATGACAATGACTTTATCATGGTTCGTCGATATTAA 954 0.4392 MRSSEVKNRTSTEDIKSLRLITAIKTPYLPDGRFDLEAYDDLMNTQIENGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLNGLISHFDSVLSMGPTIIYNVPSRTGQDIPPHIIQTLAKSVSLAGVKECVGNDRIKQYTDNGIVVWSGNDDQCHDARWGYGATGVISVVSNLVPGLIRELMFAGNNPALNSKLLPLIDWLFHEPNPIGLNTALAQLGVVRPVFRLPYVPLRVEKRIEFVNLVKNIGRKHFVGEKDVEVLDDNDFIMVRRY* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g1000 317 SMART DHDPS_2 17 293 IPR002220 GO:0016829
Lan13g1000 317 PANTHER DIHYDRODIPICOLINATE SYNTHASE 1 317 IPR002220 GO:0016829
Lan13g1000 317 CDD DHDPS 19 289 IPR005263 GO:0008840|GO:0009089
Lan13g1000 317 PIRSF DHDPS 12 304 IPR002220 GO:0016829
Lan13g1000 317 PANTHER 4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE, CHLOROPLASTIC 1 317 - -
Lan13g1000 317 TIGRFAM dapA: 4-hydroxy-tetrahydrodipicolinate synthase 20 287 IPR005263 GO:0008840|GO:0009089
Lan13g1000 317 Pfam Dihydrodipicolinate synthetase family 18 291 IPR002220 GO:0016829
Lan13g1000 317 ProSitePatterns Dihydrodipicolinate synthase signature 2. 146 176 IPR020625 GO:0016829
Lan13g1000 317 SUPERFAMILY Aldolase 20 292 - -
Lan13g1000 317 Gene3D Aldolase class I 11 317 IPR013785 -
Lan13g1000 317 ProSitePatterns Dihydrodipicolinate synthase signature 1. 53 70 IPR020624 GO:0016829
Lan13g1000 317 PRINTS Dihydrodipicolinate synthase signature 50 71 IPR002220 GO:0016829
Lan13g1000 317 PRINTS Dihydrodipicolinate synthase signature 86 104 IPR002220 GO:0016829
Lan13g1000 317 PRINTS Dihydrodipicolinate synthase signature 118 134 IPR002220 GO:0016829
Lan13g1000 317 PRINTS Dihydrodipicolinate synthase signature 141 158 IPR002220 GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g1000 Lan-Chr13 14572943 14574998 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g1000 K01714 - gmx:100788930 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g1000 13 14572943 14574998 Lan1g0765 1 17862626 17865417 PCT
Lan1g0765 1 17862626 17865417 Lan13g1000 13 14572943 14574998 PCT