Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0410 ATGGCGAGGCTGCTTCGTAACGCTTTCCTTCTCAAACGTTCTCTTTTCCTTCATCAGGGCTTTAAAGGATTATTGGGCACTTCTCACATTTTGAGCTTTTCATCTAAAGGTAGAAAGCGCTCTAAGTCTGACGGAAGTGACTCATGTGAAGAGAATACGTCTAAGAAAGATTTGGCCCTGCAACAAGCACTTGATCAGATCACTTCCACATTTGGAAAAGGATCCATCATGTGGCTTGGCCGCACTGTCTCACCAAAAAATGTACCCGTTGTGTCAACTGGTTCTTTTGCTCTGGATATAGCCCTAGGAGTTGGTGGACTTCCAAAGGGACGTGTTGTAGAAATATACGGTCCAGAGGCTTCTGGGAAAACAACTCTGGCTCTACATGTGATTGCGGAGGCACAGAAGCATGGAGGCTATTGTGCCTTTGTTGATGCTGAGCATGCTCTTGATAAGACACTTGCAGAGTCTATTGGTGTCAATACCGAGAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAAGCACTTAGTCTTGTTGATACCTTAATCCGTAGTGGTTCAATTGATGTAATTGTTGTGGACAGTGTAGCTGCTCTTGTTCCTAAAGGCGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAGGCTAGGCTGATGAGTCAGGCACTTCGAAAATTGAGCCACTCCTTGTCACTTTCCCAATCTATATTGATTTTTATAAACCAGGTGAGATCAAAGCTTTCTACTTTTGGGGGATTTGGTGGGCCCACTGAAGTTACTTGTGGTGGTAATGCATTGAAATTCTATGCTTCTGTCCGGTTAAATATCAAAAGAATAGGGTTTGTCAAGAAGGGTGAAGAGATTTTAGGAAGCCAAGTTCTTGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCATTTAAAACTGCTCAGTTTGAGCTTGAGTTTGGCAAGGGTATATGTAGAGAAGCAGAGATTATAGAATTGAGCTTAAAATACAAACTCATCTTAAAGGCTGGTTCAATGTATTATTATAATGATCAGAGTTTCCGCGGTAAGGATGCTCTTAAGAATTTCCTGTCTGATAATCATAGCACATTAGAAGAACTTGAAATGAAGCTCAGGGAGAAGCTTCTTAATGCTGAGACAGAAAAGGTATCTGAGTCAGATATGATCACTGGAGATGTTACAGAAGAAGTTGCAACACTTGATTCTACCGATGAAGAAGCCGTAGCTGTTGTAGAAGCGTGA 1257 0.4256 MARLLRNAFLLKRSLFLHQGFKGLLGTSHILSFSSKGRKRSKSDGSDSCEENTSKKDLALQQALDQITSTFGKGSIMWLGRTVSPKNVPVVSTGSFALDIALGVGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKHGGYCAFVDAEHALDKTLAESIGVNTENLLLSQPDCGEQALSLVDTLIRSGSIDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQSILIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEEILGSQVLVKVVKNKLAPPFKTAQFELEFGKGICREAEIIELSLKYKLILKAGSMYYYNDQSFRGKDALKNFLSDNHSTLEELEMKLREKLLNAETEKVSESDMITGDVTEEVATLDSTDEEAVAVVEA* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0410 418 Pfam recA bacterial DNA recombination protein 59 322 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lan1g0410 418 ProSitePatterns recA signature. 268 276 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lan1g0410 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 322 IPR027417 -
Lan1g0410 418 SUPERFAMILY RecA protein, C-terminal domain 324 379 IPR023400 -
Lan1g0410 418 SMART AAA_5 109 283 IPR003593 -
Lan1g0410 418 TIGRFAM tigrfam_recA: protein RecA 56 378 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lan1g0410 418 Coils Coil 366 386 - -
Lan1g0410 418 Hamap Protein RecA [recA]. 56 383 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lan1g0410 418 ProSiteProfiles RecA family profile 2. 256 327 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lan1g0410 418 ProSiteProfiles RecA family profile 1. 87 246 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lan1g0410 418 Gene3D - 86 390 IPR027417 -
Lan1g0410 418 CDD recA 55 382 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lan1g0410 418 PANTHER RECA 1 409 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lan1g0410 418 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 409 - -
Lan1g0410 418 PRINTS RecA protein signature 217 246 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lan1g0410 418 PRINTS RecA protein signature 298 327 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lan1g0410 418 PRINTS RecA protein signature 351 368 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lan1g0410 418 PRINTS RecA protein signature 179 208 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lan1g0410 418 PRINTS RecA protein signature 265 293 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lan1g0410 418 PRINTS RecA protein signature 145 174 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0410 Lan-Chr1 3280551 3291680 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0410 K03553 - gmx:100781271 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0410 1 3280551 3291680 Lan1g0410 1 3280551 3291680 ECH
Lan12g1002 12 16711511 16716686 Lan1g0410 1 3280551 3291680 LSH
Lan1g0410 1 3280551 3291680 Lan15g0147 15 1671741 1678266 PCT
Lan15g0147 15 1671741 1678266 Lan1g0410 1 3280551 3291680 PCT