Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0147 ATGGCGAGTCTGCTTCGCAACGCTTTTCTTTTGAAACGTTCTGTCTCGCAACCTCAACTTCCTACGGGTTTCAACCGACAAATATTGGGAACCTTTCAAAATTTCAACTTTTCAACTAGAGGTAGAAGGCGGTCTAAATCAGATGGAAGTGATTCTTGTGAAGAGAACATGTCTAAGAAGGATTTGGCCCTACAACAAGCCATGGATCAGATCACTTCTACATTCGGAAAGGGATCTATCATGTGGCTTGGACGTACTGTTTCACCAAAAAATATACCTGTGGTGTCAACTGGCTCTTTTGCTCTTGATATAGCACTAGGAGTCGGTGGCCTTCCGAAGGGACGTGTTGTGGAAATATTTGGACCAGAGGCTTCTGGGAAAACAACTCTTGCTTTACATGTGATTGCAGAGGCGCAAAAATCAGGAGGCTATTGTGCCTTTGTTGATGCCGAGCATGCACTTGATAAGGCACTTGCAGAGTCTATTGGAGTAAATACTGAAAACTTGTTACTCTCACAACCAGATTGTGGTGAACAAGCACTTAGTCTTGTGGATACCTTAATCCGTAGTGGTTCACTTGATGTAATTGTTGTTGACAGCGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAAGCTAGGTTGATGAGCCAGGCGCTTAGGAAGTTGTGTCACTCCTTGTCACTTTCACAGTGTGTATTGATTTTTATAAACCAGGTGAGGTCAAAGCTTTCGACTTTCGGGGGATTTGGTGGGCCTACTGAAGTTACCTGTGGTGGTAATGCATTGAAATTTTATGCGTCCGTGCGGCTAAATATTAAAAGAATAGGGCTTATCAAGAAAGGTGAAGAGACTTTAGGAAGCCAGGTTCAAGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCATTTAAAATTGCACAGTTTGAGCTTGAGTTTGGCAAGGGTATCTCTAGAGACGCGGAGATTATAGAGTTGAGCTTAAAACACAAGCTCATCTCAAAACACGGTTCGTTTTATCATTATAATGGCCAGAATTTTCATGGTAAGGATGCTCTTAAGAAGTTCCTCGCTCAAGGCGACGGTGCACAAGTATTAACAGTAAAACTCAGGGAGAAGCTTCTTAGTTCTGAGACAGAATTGGTGCCAGAGGCACAGGTGCTGTCGACCGCAGATGTGACCGAAGAAATGGTATCATTTGACTCTACAGACGAAGAAGCAGCCGCTGCGGTTGAAGCATGA 1269 0.4413 MASLLRNAFLLKRSVSQPQLPTGFNRQILGTFQNFNFSTRGRRRSKSDGSDSCEENMSKKDLALQQAMDQITSTFGKGSIMWLGRTVSPKNIPVVSTGSFALDIALGVGGLPKGRVVEIFGPEASGKTTLALHVIAEAQKSGGYCAFVDAEHALDKALAESIGVNTENLLLSQPDCGEQALSLVDTLIRSGSLDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCVLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGLIKKGEETLGSQVQVKVVKNKLAPPFKIAQFELEFGKGISRDAEIIELSLKHKLISKHGSFYHYNGQNFHGKDALKKFLAQGDGAQVLTVKLREKLLSSETELVPEAQVLSTADVTEEMVSFDSTDEEAAAAVEA* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0147 422 TIGRFAM tigrfam_recA: protein RecA 60 369 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lan15g0147 422 PANTHER RECA 1 411 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lan15g0147 422 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 411 - -
Lan15g0147 422 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 326 IPR027417 -
Lan15g0147 422 Pfam recA bacterial DNA recombination protein 63 327 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lan15g0147 422 ProSiteProfiles RecA family profile 1. 91 250 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lan15g0147 422 Gene3D - 90 387 IPR027417 -
Lan15g0147 422 Hamap Protein RecA [recA]. 60 398 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lan15g0147 422 ProSiteProfiles RecA family profile 2. 260 331 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lan15g0147 422 CDD recA 59 385 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lan15g0147 422 PRINTS RecA protein signature 149 178 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lan15g0147 422 PRINTS RecA protein signature 183 212 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lan15g0147 422 PRINTS RecA protein signature 221 250 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lan15g0147 422 PRINTS RecA protein signature 269 297 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lan15g0147 422 PRINTS RecA protein signature 302 331 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lan15g0147 422 SUPERFAMILY RecA protein, C-terminal domain 328 370 IPR023400 -
Lan15g0147 422 ProSitePatterns recA signature. 272 280 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lan15g0147 422 SMART AAA_5 113 287 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0147 Lan-Chr15 1671741 1678266 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0147 K03553 - gmx:100798983 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1002 12 16711511 16716686 Lan15g0147 15 1671741 1678266 PCT
Lan1g0410 1 3280551 3291680 Lan15g0147 15 1671741 1678266 PCT
Lan15g0147 15 1671741 1678266 Lan12g1002 12 16711511 16716686 PCT
Lan15g0147 15 1671741 1678266 Lan1g0410 1 3280551 3291680 PCT