Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0874 ATGTCATCTTTGAGTAGGGAACTGGTTTTCCTCATCCTTCAATTTCTCGATGAAGAGAAATTCAAGGACACTGTGTGCAAGTTGGAGCAAGAATCAGGTTTCTTATTCAATGTGAAGCATTTTGAAGAGAAAGCTTTAGCTGGAGAGTGGGATGAGGTTGAGAAATACCTCTCTGGATTCACCAAAGTAGATGACAATCGATACTCTATGAAAATTTTCTTTGAGATTAGGAAGCAAAAGTATATTGAAGCCTTGGATAGGCGTGACAAAGCCAGGGCTGTTGAAATACTGGTGAATGATTTAAAAGTTTTCTCAACATTGAATGAAGACTTATACAAAGAAATCACACATCTTTTAACGCTTGACAACTTCAGGGAAAATGAACAGTTATCGAAATATGGTGATACTAAATCAGCTCGGAACATAATGCTGATAGAGCTTAAGAAATTGATAGAAGCAAATCCCCTCTTTAGAGACAAGCTTGTATTTCCTTCATTGAATACATCACGATTACGAACCCTGATTAATCAAAGTTTGAATTGGCAGCATCAGCAGTGCAATAATCGATTGCCAAATCCAGACATCAAAACTCTACTTAGTGATCACACTTGTTCACCTTCAAATGGAGCTCGCGCAGCTACTCCTGTCACTTTTCCTGTTGCATCTGTTTCGAAGCCTTCATCTTATGATCCACTAGGAGTACACGGTGGACCATTTACACCAGCACCAGTGCCTGCAAATGTTAATGCTTTAGCAGGATGGATGGTGAATGCTAATCCTTCCTCATCTGTCCAATCGCCATTTTTTGCTGCTTCACCATTTCCTGTTCCTCCAAGTCAAGTCTCTGCTTTGAAGCATTCAAGAACACCTTCTAATGCCCTTGGAATGATGGATTATCAAAATAGCGATCATGAGCAGCAACTAATGAAACGACTGCGATCTGCACAGTCCGTTGACGACGTCGCATATTCTGCTCCAACTCAGCAAGCCTCTTCTTCACTTGATGACCTTCCTAGAACTGTTGTTTGTACTTTACAACAGGGATCGGCAGTGATAAGCATGGATTTCCATCCATCGTTTCATTCATTACTAGCTGTTGGTTGCAGAAATGGTGAAGTTTCACTCTGGGAAGCAGGACTGAGAAAAAAGCTGACATCAAAGCCTTTCAAAATATTGAATATTTCTGCTTGTTCTACCATATTTCAGGCTCTAACTGTGAAAGACTTGTCTATCTCTGTCAACCGTGTATCATGGAGCCCAGATGGGAACTTTATTGGTGTTGCTTTCACAAAACATTTGATTCATTTGTATGCTTATCAAGCGCTTAATGACCTACATCATCATTTGGAGATTGATGCTCATGTTGGTGGTGTCAATGACTTGGCATTTTCTCACATAAACAAACAGCTATGCTTTGTTACTTGTGGAGATGACAAGTTAGTAAAGGTATGGGATTGGACTGGACGGAAGCTCTTTAACTTTGAAGGTCATGAAGCACCTGTTTATTCTGTTTGCCCTCACCAGAAGGACAAGACCCAGTTTATATTTTCAACTGCTTTTGATGGGAAAATCAAGGCCTGGTTGTATGATAACATGGGCTCCAGAGTGGACTACGATGCTCCTGGACAGTGGTGCACCACAATGCTCTATAGCTCTGATGGAAGTAGATTGTTCTCTTGTGGGACAAGTAAAGATCGAGATTATTTCCTAGTTGAGTGGAATGAAAGTGAAGGAACACTAAAGAGAACATATTCTGGGTTTAGAAAGCAATTTACTGGTATTGTGCAATTTGATACATCAAAGAATCGTTTTTTGGCTGTTGGTGAAGACAACCAGATAAAGTTTTGGGACATGGACAATGTCAATATTCTGACTAGTACACATGCCGAGGGTGGTCTTCTTAGTCTCCCTCGTTTGAGGTTCAATAAGGAAGGAAATCTGCTTGCTGCTACTACAGAAGATAATGGTTTTAAAATCCTTGCTAATGCTGATGGCATCAAGTACTTAAGGGCCATTGAAGCTCGATCTTTTGAATCATCAAAAGCACCTGTTGAGACAAAGGTATTAGGGTCTTCTATGGCTACAAGTATCAATCCTCTCACCAATAAAGTAGAACATGTGGACCAAAGCTCCCCTTTTCGGCATGCGCCACCTATGCTTAATGGAGTTGAGTCTAGCACTAGAAGCATAGATAGAAAAAGAAGTTTGGATGATCTATCTGACAAATCTAAAGCTTGGGAATTGACAGAGATAGTTGATTCTGTTCAATGTCGAACAGTTACTATGCCAGATAGTATGGGTTCCACTAACAAGGTTGCTCGTCTCCTTTACACAAATTCTGGCGTTGGCCTTTTGGCTCTTGGTTCAAAAGGGATTCAGAGACTGTGGAAATGGAGTCGTAATGAACTGAATCCTGGTGGAAAGGCCACAGCAAGTGTTGTTCCAGAACATTGGCAACCACCAAATGGCGTTCTAATGACTAATGATGTCCCAGAAAATTCTGAAGCTGCAGTTCCCTGCATAGCATTATCAAAGAATGATTCCTATGTTATGTCTGCCTGTGGACGGAAAATTTCACTTTTCAACATGACGACATTTAAGGTAATGGCAACTTTTATGTCACCTCCTCCTACTTCAACATTCCTTGCGTTTCACCCCCAAGATAATAACATCGTTGCAATTGGAATGGAAGATTCAACCATTCATATTTACAATGTTAGGGTCGATGAGGTCAAATCAAAATTGAAGAGTCACCAGAAGCACATTACCGGATTAGCATTTTCAGCTAAACTGAATATCTTGGTTTCATCCGGTGCTGACGCACAGCTTGTCTTTTGGAACATTGACTCATGGGATGAGAAGAAATCACTATCAATCCAACTGCCAGCTGGAAATGCACCTTTTGGTGATACTCTAGTGCAATTTCACATTGATCAAGTAAACTTGCTGGTATGCCATGAGTTGCAGTTAGCGATATATGACGCTTCAAGAATGGAAATGGTTCGGCAGTGGGTGCCGCAAGATGGCTTGTCTGCTTCCTTATCCTCTGCAACATATTCCTGCAATAGCCAACTAGTTTATGCTGCTTTCAAGGATGGAAGCATCGGAGTATTTGATACTGACAGCCTGAAACTAAGATGTCGTATAGCTTTATCTGCATACCTACATACCTCATCAAACAGCCAAAATGCATATCCTGTTGTTATTACAGCACATCCACATGAACCAAATCAATTTGCAGTTGGACTAACAGATGGATCTATTAAGGTAATAGAGCCCATAGAATCTGAAGGGAGGTGGGGATTTAAAGCACCTCTTGATAATGCCATGCAGAATGGTATAACAGCCTCACCCTCACTCACAAATAATCACACTCCTCATCAACTCCAAAGATAG 3396 0.4084 MSSLSRELVFLILQFLDEEKFKDTVCKLEQESGFLFNVKHFEEKALAGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYIEALDRRDKARAVEILVNDLKVFSTLNEDLYKEITHLLTLDNFRENEQLSKYGDTKSARNIMLIELKKLIEANPLFRDKLVFPSLNTSRLRTLINQSLNWQHQQCNNRLPNPDIKTLLSDHTCSPSNGARAATPVTFPVASVSKPSSYDPLGVHGGPFTPAPVPANVNALAGWMVNANPSSSVQSPFFAASPFPVPPSQVSALKHSRTPSNALGMMDYQNSDHEQQLMKRLRSAQSVDDVAYSAPTQQASSSLDDLPRTVVCTLQQGSAVISMDFHPSFHSLLAVGCRNGEVSLWEAGLRKKLTSKPFKILNISACSTIFQALTVKDLSISVNRVSWSPDGNFIGVAFTKHLIHLYAYQALNDLHHHLEIDAHVGGVNDLAFSHINKQLCFVTCGDDKLVKVWDWTGRKLFNFEGHEAPVYSVCPHQKDKTQFIFSTAFDGKIKAWLYDNMGSRVDYDAPGQWCTTMLYSSDGSRLFSCGTSKDRDYFLVEWNESEGTLKRTYSGFRKQFTGIVQFDTSKNRFLAVGEDNQIKFWDMDNVNILTSTHAEGGLLSLPRLRFNKEGNLLAATTEDNGFKILANADGIKYLRAIEARSFESSKAPVETKVLGSSMATSINPLTNKVEHVDQSSPFRHAPPMLNGVESSTRSIDRKRSLDDLSDKSKAWELTEIVDSVQCRTVTMPDSMGSTNKVARLLYTNSGVGLLALGSKGIQRLWKWSRNELNPGGKATASVVPEHWQPPNGVLMTNDVPENSEAAVPCIALSKNDSYVMSACGRKISLFNMTTFKVMATFMSPPPTSTFLAFHPQDNNIVAIGMEDSTIHIYNVRVDEVKSKLKSHQKHITGLAFSAKLNILVSSGADAQLVFWNIDSWDEKKSLSIQLPAGNAPFGDTLVQFHIDQVNLLVCHELQLAIYDASRMEMVRQWVPQDGLSASLSSATYSCNSQLVYAAFKDGSIGVFDTDSLKLRCRIALSAYLHTSSNSQNAYPVVITAHPHEPNQFAVGLTDGSIKVIEPIESEGRWGFKAPLDNAMQNGITASPSLTNNHTPHQLQR* 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0874 1131 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 451 952 IPR011047 -
Lan19g0874 1131 SUPERFAMILY WD40 repeat-like 314 485 IPR036322 GO:0005515
Lan19g0874 1131 SMART ctlh 34 92 IPR006595 -
Lan19g0874 1131 SMART WD40_4 405 438 IPR001680 GO:0005515
Lan19g0874 1131 SMART WD40_4 487 528 IPR001680 GO:0005515
Lan19g0874 1131 SMART WD40_4 531 574 IPR001680 GO:0005515
Lan19g0874 1131 SMART WD40_4 577 617 IPR001680 GO:0005515
Lan19g0874 1131 SMART WD40_4 997 1039 IPR001680 GO:0005515
Lan19g0874 1131 SMART WD40_4 338 377 IPR001680 GO:0005515
Lan19g0874 1131 SMART WD40_4 1052 1092 IPR001680 GO:0005515
Lan19g0874 1131 SMART WD40_4 821 862 IPR001680 GO:0005515
Lan19g0874 1131 SMART WD40_4 865 905 IPR001680 GO:0005515
Lan19g0874 1131 SMART WD40_4 908 947 IPR001680 GO:0005515
Lan19g0874 1131 SMART WD40_4 444 485 IPR001680 GO:0005515
Lan19g0874 1131 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 1 1123 - -
Lan19g0874 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 595 626 IPR001680 GO:0005515
Lan19g0874 1131 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 933 1097 - -
Lan19g0874 1131 Gene3D - 266 565 IPR015943 GO:0005515
Lan19g0874 1131 Gene3D - 566 676 IPR015943 GO:0005515
Lan19g0874 1131 ProSitePatterns Trp-Asp (WD) repeats signature. 934 948 IPR019775 -
Lan19g0874 1131 Gene3D - 761 1097 IPR015943 GO:0005515
Lan19g0874 1131 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Lan19g0874 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 451 485 IPR001680 GO:0005515
Lan19g0874 1131 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Lan19g0874 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 915 956 IPR001680 GO:0005515
Lan19g0874 1131 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1123 IPR027728 GO:0006355
Lan19g0874 1131 SMART Lish 4 36 IPR006594 GO:0005515
Lan19g0874 1131 Pfam WD domain, G-beta repeat 448 485 IPR001680 GO:0005515
Lan19g0874 1131 Pfam WD domain, G-beta repeat 914 947 IPR001680 GO:0005515
Lan19g0874 1131 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 915 950 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0874 Lan-Chr19 16225195 16234714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0874 338 569 Miscellaneous Gene Families AT5G08390 25.620 6.81e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0874 - - qsu:112005985 1700.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0183 16 1448166 1456335 Lan19g0874 19 16225195 16234714 LSH