Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0183 ATGTCATCTTTAAGCAGAGAACTCGTTTTCCTCATCCTTCAATTTCTCGATGAAGAGAAATTCAAGGACACTGTGTGCAAGTTGGAGCAAGAATCAGGTTTCTTATTCAATGTGAAGCATTTTGAAGAGAAAGCCTTAGCTGGAGAGTGGGATGAGGTTGAGAAATACCTCTCTGGATTCACCAAAGTTGATGACAATCGATACTCTATGAAGATTTTCTTTGAGATTAGGAAACAAAAGTATATTGAAGCCTTGGACAGGCGTGACAAAGCCAGGGCTGTTGAAATACTGGTGAATGATTTAAAAGTTTTCTCAACATTGAACGAAGACTTGTACAGAGAAATTACACATCTTTTAACGCTTGACAACTTCAGGGAAAATGAACAGTTGTCAAAATATGGTGATACTAAATCAGCTCGGAACATAATGCTGGTAGAGCTTAAGAAATTGATAGAAGCAAATCCTCTCTTTAGAGATAAGCTTGCATTTCCTTCATTGAGTTCATCACGATTACGAACCCTGATTAATCAAAGTTTGAATTGGCAGCATCAACAGTGCAATAATCGATTGCCAAATCCAGACATTAAAACTCTACTTAGTGATCACACTTGTTCACCTTCAAATGGAGCTCGCGCAGCTACTCCTGTCACTTTTCCTGTCGCATCTGGTTCAAAGCCTTTATCTTATGATCCACTAGGAGCACATGGTGGACCGTTTCCACCAGCAGCTGCTAATGTTAATGCTTTAGCGGGATGGATGGTGAATGCTAACCCCTCCTCATCTGTCCAATCACCATTTTTTGCTGCTTCACCATTTCCTGTTCCCCCGAGTCAAGTCTCTGCTTTGAAGCATTCAAGAACACCTTCTAATGCCCTTGGAATGATGGATTATCAAAATAACGATCATGAGCAGCAACTAATGAAACGAGTGCGATCTGCACAGTCTGTTGATGACGTCACATATGCCGCTCCCCCTCAACAAGCCTCTTCATCACTTGATGACCTTCCTAGAACTGTTGTTTGTACCTTACATCAGGGATCAACAGTGATAAGCATGGATTTCCATCCATCGTTTCAATCACTACTAGCTGTTGGTTGCAGAAATGGTGAAGTTTCACTCTGGGAAGCAGGGCTGAGAAAGAGGCTGATATCAAAGCCTTTCAAAATATTGAATATTTCCGCTTGTTCTGCCTTATTTCAGGCTCTAACTATGAAAGACTTGTCTATCTCTGTCAACCGTGTATCATGGAGTCCAGATGGGAATTTTATTGGGATTGCTTTCACAAAACATTTGATTCATTTGTATGCTTATCAAGCGCTTAATGACCTACAGCAGCATTTGGAGATTGATGCTCATGTTGGTGGTGTCAATGACTTGGCGTTTTCTCATCTAAACAAACAGCTATGCATTGTAACTTGTGGAGATGACAAGTTAGTAAAGGTATGGGATTTAACTGGACGGAAGCTCTTTAACTTTGAAGGTCATGAAGCACCTGTTTATTCTGTTTGCCCTCACCAGAAGGACAAGACCCAGTTTATACTTTCAACTGCTTTTGATGGGAAAATCAAGGCCTGGTTGTATGATAATAATGGCTCCAGAGTGGACTATGATGCTCCTGGACAGTGGTGCACCACAATGCTCTATAGCTCTGATGGAAGTAGATTGTTCTCTTGTGGGACAAGTAAAGATCGAGATTATTTCCTAGTTGAGTGGAACGAAAGCGAAGGAACACTAAAGAGAACATATTCTGGGTTTAGAAAGCAATTTACTGGCATTGTGCAATTTGACACATCAAAGAATCGCTTTTTGGCTGTTGGTGAAGACAACCAGATAAAGTTTTGGGATATGGACAATATCAACATTCTAACTAGTACACATGCCGAGGGTGGTCTTCTTAGTCTCCCTCGCTTGAGGTTCAATAAGGAAGGAAACCTGCTTGCTGCTACTACAGATGATAATGGTTTTAAAATTCTTGCTAATGCTGATGGCATCAAGTACTTAAGGGCCATTGAAGCCCGGTCTTTTGAATCACCAAAAGCACCTGTTGAGACAAAGATGAATCAGGGATTAGGGTCTTCTGTGGTTGTAAATATCAATCCGCTCACCAATAAAGTAGAACATGTAGACCAAAGCTCTCCTTTTCGGCATGCACCAATCCTTAATGGAGTTGATTCTATCACTAGAAGCATAGATAGAAAAAGAAGTTTGGATGATTTATCTGACAAATCTAAAGCTTGGGAATTGACAGAAATAGTTGATCCTGTTCAGTGTCGAACAGTTACTATGCCAGACAGTATGGGTTCCAGTAACAAGGTTGCTCGTCTTCTTTACACAAATTCTGGGGTTGGGCTTCTGGCTCTTGGTTCAAAAGGGATTCAGAGGCTGTGGAAATGGAGCCGCAATGAACTGAATCCTAGTGGAAAGGCCACGGCAAGCGTTGTTCCACAACATTGGCAACCGCCAAATGGTGTTCTCATGACTAATGATGTCCCGGAAAATTCTGAAGCAGCAGTTCCTTGCATAGCACTCTCAAAAAATGATTCCTATGTTATGTCTGCCTGTGGACGGAAAATTTCACTTTTCAACATGACGACATTTAAGGTAATGGCAACTTTTATGTCGCCGCCCCCGACTTCAACCTTCCTTGCGTTTCACCCCCAAGATAATAACATTGTTGCAATTGGAATGGAAGATTCAGCCATTCATATTTATAATGTTAGGGTGGATGAGGTAAAATCAAAGTTGAAAAGTCACCAGAAGCACATTACCGGTTTAGCTTTTTCAACTAAACTGAATATCTTGGTTTCATCAGGTGCTGACGCTCAGCTTGTCTTTTGGAGCATTGACTCATGGGATGAGAAGAAATCACTGTCAATTCAATTGCCAGCTGGAAATGCACCTCATGGTGATACTCTAGTGCAATTCCACATTGATCAAGTAAACTTGTTGGTATGCCATGAGTCGCAGTTAGCGATATATGATGCTTCAAGAATGGAATTGATTCGGCAGTGGGTGCCACAAGATGGGTTGTCTGCTTCGATATCCTCTGCTACGTATTCCTGCAATAGCCAACTAGTTTATGCTGCTTTCACTGATGGAAGCATTGGAGTATTTGATGCTGACAGCCTGAGACTCCGATGTCATATAGCTTCATCCGCATACCTACATCAAACCTCATCAAACAGCCAAAATGTATATCCTGTAGTTATTACAGCACATCCACATGAATCAAATCAAATTGCAGTTGGACTATCAGATGGATCTATTAAGGTTATAGAGCCCATAGAATCTGAAGGAAGGTGGGGAATTAAAGCACCTGTTGATAATGCCATGCAGAATGGTAGAACAGCATCACCCTCACTCACAAATAATCACACTCCCCAACAGCTCCAAAGATGA 3399 0.4137 MSSLSRELVFLILQFLDEEKFKDTVCKLEQESGFLFNVKHFEEKALAGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYIEALDRRDKARAVEILVNDLKVFSTLNEDLYREITHLLTLDNFRENEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLAFPSLSSSRLRTLINQSLNWQHQQCNNRLPNPDIKTLLSDHTCSPSNGARAATPVTFPVASGSKPLSYDPLGAHGGPFPPAAANVNALAGWMVNANPSSSVQSPFFAASPFPVPPSQVSALKHSRTPSNALGMMDYQNNDHEQQLMKRVRSAQSVDDVTYAAPPQQASSSLDDLPRTVVCTLHQGSTVISMDFHPSFQSLLAVGCRNGEVSLWEAGLRKRLISKPFKILNISACSALFQALTMKDLSISVNRVSWSPDGNFIGIAFTKHLIHLYAYQALNDLQQHLEIDAHVGGVNDLAFSHLNKQLCIVTCGDDKLVKVWDLTGRKLFNFEGHEAPVYSVCPHQKDKTQFILSTAFDGKIKAWLYDNNGSRVDYDAPGQWCTTMLYSSDGSRLFSCGTSKDRDYFLVEWNESEGTLKRTYSGFRKQFTGIVQFDTSKNRFLAVGEDNQIKFWDMDNINILTSTHAEGGLLSLPRLRFNKEGNLLAATTDDNGFKILANADGIKYLRAIEARSFESPKAPVETKMNQGLGSSVVVNINPLTNKVEHVDQSSPFRHAPILNGVDSITRSIDRKRSLDDLSDKSKAWELTEIVDPVQCRTVTMPDSMGSSNKVARLLYTNSGVGLLALGSKGIQRLWKWSRNELNPSGKATASVVPQHWQPPNGVLMTNDVPENSEAAVPCIALSKNDSYVMSACGRKISLFNMTTFKVMATFMSPPPTSTFLAFHPQDNNIVAIGMEDSAIHIYNVRVDEVKSKLKSHQKHITGLAFSTKLNILVSSGADAQLVFWSIDSWDEKKSLSIQLPAGNAPHGDTLVQFHIDQVNLLVCHESQLAIYDASRMELIRQWVPQDGLSASISSATYSCNSQLVYAAFTDGSIGVFDADSLRLRCHIASSAYLHQTSSNSQNVYPVVITAHPHESNQIAVGLSDGSIKVIEPIESEGRWGIKAPVDNAMQNGRTASPSLTNNHTPQQLQR* 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0183 1132 SUPERFAMILY Nucleoporin domain 338 434 - -
Lan16g0183 1132 Gene3D - 830 1101 IPR015943 GO:0005515
Lan16g0183 1132 Gene3D - 540 673 IPR015943 GO:0005515
Lan16g0183 1132 SMART ctlh 34 92 IPR006595 -
Lan16g0183 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 484 IPR001680 GO:0005515
Lan16g0183 1132 ProSitePatterns Trp-Asp (WD) repeats signature. 470 484 IPR019775 -
Lan16g0183 1132 SUPERFAMILY WD40 repeat-like 769 1093 IPR036322 GO:0005515
Lan16g0183 1132 SMART WD40_4 908 947 IPR001680 GO:0005515
Lan16g0183 1132 SMART WD40_4 403 436 IPR001680 GO:0005515
Lan16g0183 1132 SMART WD40_4 336 375 IPR001680 GO:0005515
Lan16g0183 1132 SMART WD40_4 997 1039 IPR001680 GO:0005515
Lan16g0183 1132 SMART WD40_4 1051 1093 IPR001680 GO:0005515
Lan16g0183 1132 SMART WD40_4 442 483 IPR001680 GO:0005515
Lan16g0183 1132 SMART WD40_4 485 526 IPR001680 GO:0005515
Lan16g0183 1132 SMART WD40_4 529 572 IPR001680 GO:0005515
Lan16g0183 1132 SMART WD40_4 575 615 IPR001680 GO:0005515
Lan16g0183 1132 SMART WD40_4 865 905 IPR001680 GO:0005515
Lan16g0183 1132 SMART WD40_4 821 862 IPR001680 GO:0005515
Lan16g0183 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 593 624 IPR001680 GO:0005515
Lan16g0183 1132 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 915 950 - -
Lan16g0183 1132 MobiDBLite consensus disorder prediction 1110 1132 - -
Lan16g0183 1132 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Lan16g0183 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 915 956 IPR001680 GO:0005515
Lan16g0183 1132 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1124 IPR027728 GO:0006355
Lan16g0183 1132 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 1 1124 - -
Lan16g0183 1132 MobiDBLite consensus disorder prediction 1111 1132 - -
Lan16g0183 1132 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Lan16g0183 1132 Pfam WD domain, G-beta repeat 444 483 IPR001680 GO:0005515
Lan16g0183 1132 Pfam WD domain, G-beta repeat 914 947 IPR001680 GO:0005515
Lan16g0183 1132 Gene3D - 276 536 IPR015943 GO:0005515
Lan16g0183 1132 SMART Lish 4 36 IPR006594 GO:0005515
Lan16g0183 1132 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 409 960 IPR011047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0183 Lan-Chr16 1448166 1456335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0183 430 643 Miscellaneous Gene Families AT5G08390 23.853 3.76e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0183 - - qsu:112005985 1715.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0183 16 1448166 1456335 Lan19g0874 19 16225195 16234714 LSH