Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0577 ATGGATTGTATGTACAAGAATCCCAACGAACCAATTGAAGCCCGTGTCAGGGACCTTCTTTCCCGTATGACTCTGAAGGAGAAAATTGGTCAAATGACCCAAATTGAGCGCACTGTTTCTACCGCTTCTTCTCTTAGAGATCTCTCCATTGGTAGCGTACTCAGTTGTGGAGGCAGTGCACCTTTTGAAAATGCATTGTCATCAGATTGGGCTGATATGGTGGATGGCTTTCAAAAATCGGCCTTAGAGTCAAGACTGGGAATACCACTCATCTATGGGATTGATGCAGTTCATGGTAATAATAGCATCTATGGTGCTACCATATTCCCTCACAATGTTGGCCTTGGAGCTACCAGAGATGCTGATTTAGCTCGAAGAATTGGAGCTGCAACAGCACTTGAAGTTAAAGCCAGTGGAATTCACTATGACTTTGCTCCTTGTGTGGCTGTCTGCAAAGATCCAAGATGGGGAAGATCCTATGAAAGTTACAGTGAAGACACTGAAATAGTCAGAAATATGACTTCCATTGTTTCAGGTTTGCAAGGCCAGCCACCACAAGGACATAGCCATGGATACCCTTTTGTGGCCGGAAGGAAAAATGTTATCGCGTGTGCCAAACATTTCGTTGGAGATGGAGGTACTTATAAAGGTGTGAATGAGGGGAATACTACATTATCTTACGAAGAGTTAGAGAAAACCCACATGGCACCTTACTTGGACTGCATTTCCCAGGGAGTTTCGACCATTATGGCATCCTATTCGAGCTGGAATGGACGCAAACTTCATGCAGACCATTTTCTTTTAACTGAAATCTTGAAAGAAAAGCTAGGTTTTAAGGGTTTTGTGATTTCTGATTATGAGGGACTTGACCGACTTTGTCACCCTCATGGATCAGATTATAGGTACTGCATCTCCTCTGCTGTCAATGCTGGAATTGACATGGTAATGGTGGCGTTTAGATTCAAAGAATTCATTGAAGATTTGACCTTTCTAGTTGAATCCGGCGAAGTACCAATTAGCCGAATTGATGATGCTGTTGAGAGAATTTTGAGAGTAAAGTTTGCTGCTGGTCTTTTCGAATTTCCTTTGAGTGACCGATCTTTGCTAGATATAGTTGGTTGCAAGCCACATAGAGATCTAGCACGTGAAGCAGTTCGGAAGTCTTTGGTTCTGTTGAAAAATGGAAAAGATGGGAGCAAACCTTTTCTTCCATTGGATAGGAATGCGAAAAGAATCCTTGTTACTGGAACTCATGCTGATAATCTTGGATTTCAATGTGGAGGTTGGACTAAAACATGGTATGGCGGTAGTGGGCGGATTACAGTAGGGACTACAATCTTGGATGCTGTCAAGGCAAGTGTAGGAGTTGGAACAGAAGTAGTTTACCAGAAGTATCCATCAAAAGACACCATAGAAGATAGTGAAATCTCTTTTGCAATTGTAGCTGTCGGCGAAGCTCCTTATGCTGAGACCTTGGGCGACAAGTCAGACCTTACAATACCATTCAATGGAGCTGACATTATAAGCTTAGTGGCTGACAAAATCCCGACTCTGGTTATTCTGATATCCGGGCGACCGTTAATCTTAGAACCATGGCTGCTGGAAAAGTCAGATGCTGTTGTTGCTGCTTGGCTTCCAGGTACCGAAGGACAGGGAATCACAGATGTTATCTTTGGCAGTCATGACTTCAAGGGTCAACTACCAGTGACTTGGTTCAGAAGAGTTGAACAGCTTGATCAACAACTTGATGGAGTTAATTCAACTGAACCCTTATTTCCTCTTGGTTTTGGTCTAACTTATAACTAG 1806 0.4291 MDCMYKNPNEPIEARVRDLLSRMTLKEKIGQMTQIERTVSTASSLRDLSIGSVLSCGGSAPFENALSSDWADMVDGFQKSALESRLGIPLIYGIDAVHGNNSIYGATIFPHNVGLGATRDADLARRIGAATALEVKASGIHYDFAPCVAVCKDPRWGRSYESYSEDTEIVRNMTSIVSGLQGQPPQGHSHGYPFVAGRKNVIACAKHFVGDGGTYKGVNEGNTTLSYEELEKTHMAPYLDCISQGVSTIMASYSSWNGRKLHADHFLLTEILKEKLGFKGFVISDYEGLDRLCHPHGSDYRYCISSAVNAGIDMVMVAFRFKEFIEDLTFLVESGEVPISRIDDAVERILRVKFAAGLFEFPLSDRSLLDIVGCKPHRDLAREAVRKSLVLLKNGKDGSKPFLPLDRNAKRILVTGTHADNLGFQCGGWTKTWYGGSGRITVGTTILDAVKASVGVGTEVVYQKYPSKDTIEDSEISFAIVAVGEAPYAETLGDKSDLTIPFNGADIISLVADKIPTLVILISGRPLILEPWLLEKSDAVVAAWLPGTEGQGITDVIFGSHDFKGQLPVTWFRRVEQLDQQLDGVNSTEPLFPLGFGLTYN* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0577 601 Pfam Glycosyl hydrolase family 3 C-terminal domain 389 600 IPR002772 GO:0004553|GO:0005975
Lan19g0577 601 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 389 600 IPR036881 GO:0004553|GO:0005975
Lan19g0577 601 PRINTS Glycosyl hydrolase family 3 signature 85 101 IPR001764 GO:0004553|GO:0005975
Lan19g0577 601 PRINTS Glycosyl hydrolase family 3 signature 109 128 IPR001764 GO:0004553|GO:0005975
Lan19g0577 601 PRINTS Glycosyl hydrolase family 3 signature 155 171 IPR001764 GO:0004553|GO:0005975
Lan19g0577 601 PRINTS Glycosyl hydrolase family 3 signature 201 217 IPR001764 GO:0004553|GO:0005975
Lan19g0577 601 PRINTS Glycosyl hydrolase family 3 signature 271 289 IPR001764 GO:0004553|GO:0005975
Lan19g0577 601 ProSitePatterns Glycosyl hydrolases family 3 active site. 271 288 IPR019800 GO:0004553|GO:0005975
Lan19g0577 601 Gene3D - 375 601 IPR036881 GO:0004553|GO:0005975
Lan19g0577 601 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 2 600 - -
Lan19g0577 601 Gene3D - 2 373 IPR036962 GO:0004553|GO:0005975
Lan19g0577 601 PANTHER BETA-D-GLUCAN EXOHYDROLASE-LIKE PROTEIN 2 600 - -
Lan19g0577 601 SUPERFAMILY (Trans)glycosidases 4 388 IPR017853 -
Lan19g0577 601 Pfam Glycosyl hydrolase family 3 N terminal domain 24 352 IPR001764 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0577 Lan-Chr19 10520879 10538321 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0577 3 601 Glycoside Hydrolase AT3G47040 72.167 0.0 927
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0577 K05349 - gmx:100819117 1063.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0198 16 1547306 1553561 Lan19g0577 19 10520879 10538321 LSH