Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0546 ATGGGTTTTTATCTAAATCCCATTATTCCCCATATTACCCTCACTACTCTCCTCTATTTACTCCTCCTATCACCACCACTCCCCACCCTCTCCCTCAACCTCACCGCCATCCTCTCCACATTCCCCGATTTCTCCCAATTCACCACCCTCCTCTCCTCCGCCACTTCCCTCTCCTCCGACCTCTCCGACCGCACCTCCCTCTCTCTCCTCGCCGTCCCTAACTCCTTCCTCAACTCCCCTTCCTCCCCTCTCCTCACCCACCAAATCACTCCCTCCGCCATCCCCGACATCCTCCGCTACCACGTCCTCCTCCAATTCCTCTCCTGGTCCGACCTCCGCTCCCTCCCGCCCTCCGGTAAAGTCATCACCACTCTCCTCCAAACCACCGGACGCGCCCCGGACAATCTCGGATCCGTGAACCTCACGCGCGACCCGTTTTCCAACCTCATCTCGATTCATTCACCTTCTCCTTATTCCTCTTACAACGCCACCGTTTTATCACTAGTGAAAACCCTTCCGTACAATATAACCGTTTTTTCTATCAATTCTCTTCTCATCCCTTCTGGTTTCAATCTCATGGCTTCGGAAACAAGACCTAATTTAGGTCTTAACATTACGAAAGCTTTGATCGATGGTCACAATTTCAATGTTGCGGCGTCGCTTCTTTCAGCTTCTGGTGTTATTGAAGAATTCGAAAACGATGAAGGTGGTGCCGGAATCACGTTGTTTGTTCCCGTCGACGATGCATTCGCCGATCTTCCACCGTCGGCGAGTTTTCAGTCACTACCGGCGGATAAGAAAGCTGTTGTGCTCAAATTTCATGTTCTACATTCGTATTACCCTTTGGGATCGTTGGAATCTATTGTGAACCCGGTTCAACCCACGCTCGCTACTGAAACCATGGGTGCTGGGAGCTTCACGCTTAACATTTCACGGCTGAATGGTTCGGTTGCAATTAACACCGGAATTGTACAAGCCACTGTTACTCGAACCGTTTTTGATCAGAATCCGGTTGCTATTTTCGGCATTTCGAAGGTTCTGTTGCCTGTTGAGATGTTTGGGAAGAATCAAATTGCGCCTACCAAGCCTGGTGGGCTGGTTCAGGAAGCGCCCTCGCCGGATAGTGATGCATTAACGCCAGAGAATTCGCCCGGGTTCAATGACCAACCGTCACACCTTTCGTCGCCACCGGGTTTTGGCCAAGATGTTGGGTCCAATGCTGTTGCTAATGTTGTTTATGGTTTCAAATCTTTTGCTGTTTGTATAGTATTGTTAGTAGTGATATAA 1287 0.4996 MGFYLNPIIPHITLTTLLYLLLLSPPLPTLSLNLTAILSTFPDFSQFTTLLSSATSLSSDLSDRTSLSLLAVPNSFLNSPSSPLLTHQITPSAIPDILRYHVLLQFLSWSDLRSLPPSGKVITTLLQTTGRAPDNLGSVNLTRDPFSNLISIHSPSPYSSYNATVLSLVKTLPYNITVFSINSLLIPSGFNLMASETRPNLGLNITKALIDGHNFNVAASLLSASGVIEEFENDEGGAGITLFVPVDDAFADLPPSASFQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATETMGAGSFTLNISRLNGSVAINTGIVQATVTRTVFDQNPVAIFGISKVLLPVEMFGKNQIAPTKPGGLVQEAPSPDSDALTPENSPGFNDQPSHLSSPPGFGQDVGSNAVANVVYGFKSFAVCIVLLVVI* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0546 428 Pfam Fasciclin domain 214 349 IPR000782 -
Lan19g0546 428 MobiDBLite consensus disorder prediction 361 399 - -
Lan19g0546 428 ProSiteProfiles FAS1/BIgH3 domain profile. 31 185 IPR000782 -
Lan19g0546 428 MobiDBLite consensus disorder prediction 375 399 - -
Lan19g0546 428 SUPERFAMILY FAS1 domain 37 187 IPR036378 -
Lan19g0546 428 SMART fasc_3 241 350 IPR000782 -
Lan19g0546 428 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 4 9 418 - -
Lan19g0546 428 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 9 418 IPR033254 -
Lan19g0546 428 Gene3D FAS1 domain 31 187 IPR036378 -
Lan19g0546 428 ProSiteProfiles FAS1/BIgH3 domain profile. 202 347 IPR000782 -
Lan19g0546 428 Gene3D FAS1 domain 203 350 IPR036378 -
Lan19g0546 428 SUPERFAMILY FAS1 domain 209 350 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0546 Lan-Chr19 8906088 8907872 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0546 - - ccaj:109812902 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0091 4 1285825 1288556 Lan19g0546 19 8906088 8907872 LSH