Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0422 ATGGCAGTAACATCAACCTCACTCTCTTCTCAACTCTACATTGGACTTCACCGTCCCACACCAAAGTTCGAATCTTTCACTTCTCAATCTTTCTTTGATTCAGTTCATTCCAATCTTCGCCTCTCTGTTTCTCCTCCCAAACGCTCCTCTTCCATCGTTGCTATGGCTTCCTCTGCCAAGTTCTTTGTTGGTGGCAACTGGAAGTGTAACGGAACAAAAGACTCCATCAGTAAGCTTCTCAATGACTTGAACAGTGCAAAGTTGGAGCCTGATGTTGATGTTGTTGTTGCCCCTCCCTTCGTGTACATCGATCAGGTGAAAGGCTCAATTACAAATCGCATTGAAATATCTGCCCAGAATTCCTGGGTGGGAAAAGGTGGTGCTTTCACAGGAGAAATCAGTGTGGAACAACTGAAGGACCTTGGAGTCAAGTGGGTTATTCTGGGGCATTCTGAGAGAAGACATGTTATTGGAGAAAAAGATGAGTTCATAGGAAAGAAAGCTGCCTATGCTTTGAGCGAGGGTCTTGGAGTGATAGCTTGCATTGGGGAACTATTGGAAGATAGGGAAGCTGGAAAAACTTTTGATGTTATTTTCGAGCAATTGAAGGCTTATGCAGATGTAGTGCCAAGTTGGGATAATATTGTTATTGCATATGAACCTGTATGGGCTATTGGAACTGGCAAAGTGGCTACACCCCAGCAAGCTCAGGAAGTGCATGTTGCTATCCGTGATTGGCTTAAAAAGAATGTGTCACCTGAAGTTGCATCTAAAACCCGTGTTATTTATGGAGGGTCTGTAAATGGAGGTAACAGTGCTGAGCTCGCAAAGGAAGAAGATATTGATGGATTCCTTGTTGGTGGTGCTTCCTTAAAGGGTCCTGAGTTTGCTACCATTATCAATTCAGTAACATCCAAGAAAGTTGCAGCTTGA 933 0.4373 MAVTSTSLSSQLYIGLHRPTPKFESFTSQSFFDSVHSNLRLSVSPPKRSSSIVAMASSAKFFVGGNWKCNGTKDSISKLLNDLNSAKLEPDVDVVVAPPFVYIDQVKGSITNRIEISAQNSWVGKGGAFTGEISVEQLKDLGVKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGELLEDREAGKTFDVIFEQLKAYADVVPSWDNIVIAYEPVWAIGTGKVATPQQAQEVHVAIRDWLKKNVSPEVASKTRVIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIINSVTSKKVAA* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0422 310 SUPERFAMILY Triosephosphate isomerase (TIM) 55 303 IPR035990 GO:0004807
Lan19g0422 310 CDD TIM 61 301 IPR000652 GO:0004807
Lan19g0422 310 ProSitePatterns Triosephosphate isomerase active site. 218 228 IPR020861 GO:0004807
Lan19g0422 310 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 60 302 IPR000652 GO:0004807
Lan19g0422 310 PANTHER TRIOSEPHOSPHATE ISOMERASE 1 308 IPR000652 GO:0004807
Lan19g0422 310 Gene3D Aldolase class I 42 309 IPR013785 -
Lan19g0422 310 Hamap Triosephosphate isomerase [tpiA]. 59 302 IPR022896 GO:0004807|GO:0006096
Lan19g0422 310 PANTHER TRIOSEPHOSPHATE ISOMERASE, CHLOROPLASTIC 1 308 - -
Lan19g0422 310 Pfam Triosephosphate isomerase 62 302 IPR000652 GO:0004807
Lan19g0422 310 TIGRFAM tim: triose-phosphate isomerase 62 292 IPR000652 GO:0004807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0422 Lan-Chr19 5627027 5631979 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0422 K01803 - gmx:100819824 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0410 9 5938294 5942663 Lan19g0422 19 5627027 5631979 LSH