Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1123 ATGAATAGTGAAATCCCTAAAGCAGAAGAAATGGATGGTTCATTTGAAGATGAAGATGATTCAACTGCTGTTACAATCGGCGAGTACCTTGATGAAGTTGAGGAGCGAGAGCTGGCAGCTGATTTAGTTCTTGGCGGTGATGATGGCAAGGAATGTACCTATAGCAAAGGATATATGAAAAGGCAGGCAATTTTCTCTTGCCTCACCTGCACCCCAGATGGCAATGCTGGAGTTTGCACAGCTTGCTCATTGTCTTGCCATGATGGCCACCAGATCGTGGAACTATGGACAAAAAGAAACTTCAGGTGTGATTGTGGCAATTCAAAGTTTGGCGAATTCTACTGCAAGCTTTTCGCAGGCAAAGATCCAGAGAATGTTGAGAACTCATACAATCACAACTTTAAAGGTTTGTATTGCACTTGTAGTCGCCCCTACCCAGACCCGGAAGCTGTAGAACAAGGAGAAATGATACAGTGCTGTCTATGTGAGGACTGGTTCCATGAGGAGCATCTTGGTCTTGAGTTTTCTGATGAGTTTCCCAGAGATGATGAAGGAGAGCCTCTGTATGAGGATTTCATCTGTAAGGCATGCTCTGAGGTGTGTTTCTTTCTAAAATTATATCCTGAAGTGATACGGGCTTCCAGAAAGCAGCCAGACGCTACTGTCGAAGTTAGCAAGGGTAAAGGTGTTCTGGAAGCTATGCCTCCAATGAGTGAGGCTTCTTCACACAATTCTCCTAAAATTGATGATGCAAAAGCAACTATTTCTGAATCTATATCTGGTGGTAAGGATCTGCTTCAGGGAGGAAATTGTGACAACAGTAAGGATTTAAGCCAATGCACAAGCAGCACCAATATGCATGTTCCCTGCCTTCTTGGTGTTCACATTGTTTCTGCTTCCCCAGTATTGGATGGTAAACCAATATTCCTTTCCAAAAACTGGAGAGATGCTCTATGCAAATGCAACAATTGTTTCGAGTTTTACAACCAGAAGCGGATCGCTTTTCTACTTGACAAGGAAGACTCAATTGTGGAATATGAGAAAATGGCCAAGCAGAAGAGAGAAGAAAAGTTGCAGGAAGTAGAGGGTGCTGAGGCAAACTTCTTTAATAAGCTTGGGCACGTAGAGAAAGTGGAGATCTTGAATGGCATTGAAGAAATGAAGGACGGGCTTCGTAATTTCCTGGAATCTGCAGACTCATCAAAGCCAATTACTGAGGCTGATGTCCACCAATTTTTTGAAGAAATTAAGAAAAAGCGTCGCCGTATACAGTGA 1275 0.4306 MNSEIPKAEEMDGSFEDEDDSTAVTIGEYLDEVEERELAADLVLGGDDGKECTYSKGYMKRQAIFSCLTCTPDGNAGVCTACSLSCHDGHQIVELWTKRNFRCDCGNSKFGEFYCKLFAGKDPENVENSYNHNFKGLYCTCSRPYPDPEAVEQGEMIQCCLCEDWFHEEHLGLEFSDEFPRDDEGEPLYEDFICKACSEVCFFLKLYPEVIRASRKQPDATVEVSKGKGVLEAMPPMSEASSHNSPKIDDAKATISESISGGKDLLQGGNCDNSKDLSQCTSSTNMHVPCLLGVHIVSASPVLDGKPIFLSKNWRDALCKCNNCFEFYNQKRIAFLLDKEDSIVEYEKMAKQKREEKLQEVEGAEANFFNKLGHVEKVEILNGIEEMKDGLRNFLESADSSKPITEADVHQFFEEIKKKRRRIQ* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1123 424 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR7 9 423 IPR040204 GO:0008270|GO:0061630
Lan18g1123 424 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR7-RELATED 9 423 - -
Lan18g1123 424 ProSiteProfiles Zinc finger UBR-type profile. 50 120 IPR003126 GO:0008270
Lan18g1123 424 Pfam Putative zinc finger in N-recognin (UBR box) 52 116 IPR003126 GO:0008270
Lan18g1123 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 200 IPR013083 -
Lan18g1123 424 SMART push_1 50 119 IPR003126 GO:0008270
Lan18g1123 424 SUPERFAMILY FYVE/PHD zinc finger 125 206 IPR011011 -
Lan18g1123 424 Coils Coil 336 367 - -
Lan18g1123 424 SMART PHD_3 138 198 IPR001965 -
Lan18g1123 424 CDD PHD_UBR7 138 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1123 Lan-Chr18 16194919 16201413 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1123 K11979 - gmx:100817441 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g1123 18 16194919 16201413 Lan18g1123 18 16194919 16201413 ECH
Lan18g1123 18 16194919 16201413 Lan6g0076 6 513642 519021 LSH