Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0789 ATGCCATATAAAGTCCCCAAATATGGATCATCATCTAAGGGTAGGAAGATCACACAGCTGAACAGTGATCTCGATCACGAAGGCGATAATGGGAATGTTAACCATGCTACCTATACAGTGCACATTCCTCCAACCCCAGATAACCAGCCTATGGAGATTTCTCTGGAGAGGTCCCCTTCAAGGAGAGTGGAGGACCGGTATGCATCTAGTTCTACGTTTAATGGCGGTTTCAATCACATTACGCAAGCGCATTTGAAGGAGAAGGTGACTGAAACTGATTACAGCCATCCTCAGATGAATGTTGCAAAAGGGTTATCTTGTACTGTTCCTGGTTGTGATGGAAAGCTCTTCATTGATGAGGGAGGAATGGATATGCTTTATTGTGACTGTTATGACAAGATTTGTAGGGATTGTTATTCAGATGCTTTAAGGGATGGTGAGGGGATTTGCCCTCGGTGCAAAGAGCCTTTCAAGGATTTGGATACGCATTTGGCTGATATGGCCAACGACCAGGGGTTGCCCATGCCATCCAGTGCTGGGGTGTCCAAGCCAGAGAGGAGTCTGCCGTTGGTGAAATCGGGGCTGTTGGTGAAATCGGGGCCGTTGGTGAAATCGGGGCCTTTGGCGAGAAACCAACCTAATGATCAAAATTTGTTTATGAACCAAACTAATGAATTTGATCATGATCAATGGTTTTTTGAAGGTAAGGGGAGCTATGGATTTGGGAATGCTATGTGGCCAAAAGATTGTGAGAATGATGGCAGTTCTGGTTCTGATTGGATGGCTGTTGATCCTAATGCCTTCCAGGAAAAGCAGTGGAGACCTTTGACCCAGAAAGTGAAAATTTCTGCTGCAATTCTGAGTCCATATCGGCTCATAATATTCATCCGGTTGGTGGTGCTTGCTTTTTTTCTAACGTGGAGGGTCCGAAACCCCAATGATGATGCAAAATGGCTGTGGGGCATGTCTGTGGTTTGTGAAATCTGGTTCGCCTTCTCTTGGCTGCTTGACCAGCTTCCTAAGCTATTCCCCATAAATCGTGCTGCTGATCTCGAAGTCTTAAAAGAGAAGTTTGAAACTCCTAGTCCCGTCAATCCTGCTGGCAAGTCTGATCTTCCAGGAGTAGACATTTTTGTGTCAACTGCAGATCCAGAAAAAGAGCCCCCACTTGTCACTGCAAACACTATTCTTTCTATTCTAGCTGTTGATTATCCTGTTGAGAAGCTTTCATGTTATGTCTCTGATGATGGAGGCGCACTTCTAACTTTTGAGGCCATGGCAGAGGCTGCAAGTTTCGCCAATGTGTGGGTTCCTTTTTGTCGGAAGCATGACATTGAACCTAGGAACCCAGAATCTTATTTTAGTCTAAAGAGAGATCCCTACAAGAACAAGGTACGTTCTGACTTTGTAAGGGATCGCAGGCAGGTAAAGCGAGAGTATGATGAATTCAAGGTCCGGGTTAATGCCCTTCCCGATTCGATGCGGAGGCGTTCTGATGCTTATAATGCCAGAGAGGAGATCAAAGCTATCAAGCTTTGGAGGGAGAATGGAAACACTGAACCAATGGAGAATATGAAATTTCCTAAAGGTACTTGGATGACTGATGGTACACATTGGCCAGGCACTTGGACAAGTAGTGCACCGGAGCATTCTAGGGGAGATCATACCAGTATCATACAGGTAATGATAAAACCCCCGAGCGATGAACCATTGACAGGCACAAGATCAAATTCAACCGACATGGATTTAACTGAAGTTGATGTTCGTCTTCCAATGCTTGTCTATGTTTCTCGTGAAAAAAGACCTGGATATGATCACAACAAGAAGGCTGGGGCCATGAATGCCCTGGTTCGAGCCTCAGCCATCATGTCCAATGGCCCTTTCATACTTAACCTTGACTGTGATCATTACATATATAACTCCGAGGCACTAAGGGAAGGCATGTGCTACATGATGGACAGCGGTGGGGAAAAGATCTGCTACATTCAATTCCCTCAAAGGTTTGAAGGAATTGATCCTTCTGATCGCTATGCCAATCATAACACTGTATTCTTTGATGTCAATATGCGGGCTCTCGATGGACTCCAAGGTCCAGTATATGTTGGCACAGGATGCCTATTCAGAAGGACTGCACTGTATGGATTTGATCCACCAAGGGTTAAAGAAGAAACTGATTGCTTTGGTCGTAAGAAGAAATCCTCATCGGTTTCCTCTGCCCCCGAAGCTGTTGATGTTGAGGACCAGTCATTGAGGAACGGCAGCATTGATGAAGAAGACATGAATATTGCTCTTATTCCTAAGAGTTTTGGCAACTCAAGTCTCTTTATTGACTCAATAAGGTTGGCGGAGTTCCAAGGGCGTCCCCTTGCTGATCACCCATCTATCAAATATGGACGACCTCCAGGTGCTCTAATCGGTCCCCGTGAACCTCTCGATGCTCCAATTCTTGCTGAGGCAATCAGTGCGGTCTCATGCTGGTATGAAGATAAGACTGAATGGGGTGATAGAGTTGGATGGATTTATGGATCAGTAACTGAAGATGTCGTGACAGGTTATAGAATGCACAATAGAGGATGGAGGTCTATATATTGTGTGACCAAGAGGGATGCCTTCCGCGGCAGTGCTCCAATCAATCTGACTGACCGGCTTCACCAGGTTCTTCGATGGGCTACTGGCTCGGTTGAAATATTCTTTTCACGTAACAATGCTCTTGTAGCTAGTTCCAGAATGATGTTCCTGCAGAGGATTGCTTACCTTAATGTTGGAATTTACCCTTTCACTTCCATCTTTCTCATTGTTTACTGCTTCGTTCCTGCACTTTCCCTCTTCACCGGCCAGTTCATTGTCCAGACCGTTCAAATAACCTTCCTAATTTACCTCTTGGGCATCACCGTGACCCTTGTTCTACTCGCCATTCTGGAGATCAAATGGTCCGGTATTGATCTTGAAGAGTGGTGGAGGAATGAGCAATTCTGGTTGATCGGAGGCACAAGTGCCCATCTTGCTGCTGTCCTGCAAGGTCTACTAAAGGTGATTGCTGGCATTGAGATTTCATTCACCCTGACATCAAAATCCGGCGGCGATGATGTAAACGATGAATTCGCCGATCTTTATATCCTGAAATGGACCTCTCTCATGATACCACCCCTGACAATCATGATGGTCAATGTGATAGCGATAGCTATAGCCGCTATCCGGACGATATACAGCAATAACACTCATGGATGGAGCAGTTTGCTTGGAGGTGTGTTCTTCAGTTTTTGGGTATTGGCTCATCTGTATCCCTTTGCAAAAGGACTTATGGGTAGAAGGGGAAAGAGTCCTACTGTTGTGTATGTATGGGCTGGTCTAATATCAATCACTATTTCACTCCTTTGGGTTGCTATTAGTCCTCCATCTGGGAGCAGTGAAATTGGAGGGTCATTCCAATTCCCTTGA 3438 0.4538 MPYKVPKYGSSSKGRKITQLNSDLDHEGDNGNVNHATYTVHIPPTPDNQPMEISLERSPSRRVEDRYASSSTFNGGFNHITQAHLKEKVTETDYSHPQMNVAKGLSCTVPGCDGKLFIDEGGMDMLYCDCYDKICRDCYSDALRDGEGICPRCKEPFKDLDTHLADMANDQGLPMPSSAGVSKPERSLPLVKSGLLVKSGPLVKSGPLARNQPNDQNLFMNQTNEFDHDQWFFEGKGSYGFGNAMWPKDCENDGSSGSDWMAVDPNAFQEKQWRPLTQKVKISAAILSPYRLIIFIRLVVLAFFLTWRVRNPNDDAKWLWGMSVVCEIWFAFSWLLDQLPKLFPINRAADLEVLKEKFETPSPVNPAGKSDLPGVDIFVSTADPEKEPPLVTANTILSILAVDYPVEKLSCYVSDDGGALLTFEAMAEAASFANVWVPFCRKHDIEPRNPESYFSLKRDPYKNKVRSDFVRDRRQVKREYDEFKVRVNALPDSMRRRSDAYNAREEIKAIKLWRENGNTEPMENMKFPKGTWMTDGTHWPGTWTSSAPEHSRGDHTSIIQVMIKPPSDEPLTGTRSNSTDMDLTEVDVRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSEALREGMCYMMDSGGEKICYIQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRTALYGFDPPRVKEETDCFGRKKKSSSVSSAPEAVDVEDQSLRNGSIDEEDMNIALIPKSFGNSSLFIDSIRLAEFQGRPLADHPSIKYGRPPGALIGPREPLDAPILAEAISAVSCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSIYCVTKRDAFRGSAPINLTDRLHQVLRWATGSVEIFFSRNNALVASSRMMFLQRIAYLNVGIYPFTSIFLIVYCFVPALSLFTGQFIVQTVQITFLIYLLGITVTLVLLAILEIKWSGIDLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVNDEFADLYILKWTSLMIPPLTIMMVNVIAIAIAAIRTIYSNNTHGWSSLLGGVFFSFWVLAHLYPFAKGLMGRRGKSPTVVYVWAGLISITISLLWVAISPPSGSSEIGGSFQFP* 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0789 1145 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 172 IPR013083 -
Lan18g0789 1145 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN 51 1143 - -
Lan18g0789 1145 SUPERFAMILY RING/U-box 95 161 - -
Lan18g0789 1145 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 572 727 IPR029044 -
Lan18g0789 1145 SUPERFAMILY Nucleotide-diphospho-sugar transferases 390 725 IPR029044 -
Lan18g0789 1145 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 51 1143 - -
Lan18g0789 1145 Pfam Cellulose synthase 375 1134 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lan18g0789 1145 Pfam RING/Ubox like zinc-binding domain 109 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0789 Lan-Chr18 13354306 13359405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0789 14 1145 Glycosyltransferase AT3G03050 71.629 0.0 1681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0789 K20924 - gmx:100813900 1807.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0789 18 13354306 13359405 Lan18g0789 18 13354306 13359405 ECH
Lan18g0789 18 13354306 13359405 Lan6g0476 6 3934540 3939733 LSH