Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0060 ATGTCGGATGCATATGAAGGCCAAGAGCCTCCTGTACCACCAACTGTAAGATTTGCCCGAAGAACATCCTCGGGTCGCTATGTCAGTTACTCAAGGGATGATCTTGATAGTGAGCATGAGAGTGGTGACTTCATGAATTACACGGTGCATATACCACCAACCCCTGATAACCAACCTATGGATCCATCAATCTCACAGAAAGTTGAGGAGATATATGTGTCCAATTCACTCTTCACAGGCGGGTTCAACAGTGTTACTCGAGCACATCTCATGGATAAGATAATAGAATCTGAAGCAAACCATCCACAGATAGCTGGTGCAAAAGGATCTTCGTGTGCGGTTCTTGGATGTGATTCTAAGGTGATGAGTGATGAACGTGGTGTGGATATTCTTCCGTGTGAGTGTGATTTTAAGATATGCAGAGATTGTTACCTAGATGCAATAAAAATGGGAGGTGGGGCATGCCTGGGATGCAAGGAGCCATATAAGAACGCCGAACTAGATGTGGATGATGATCATTCCCTTTCACTTCCTCTGCCAAGTGGGATATCTAAGATGGAGAGGAGAATGTCTAAGATGAAGTCAACTAATAAATCAGCATTGATGAGGAGCCAAACTGGAGAACTCGATCATAATAGGAACCTTTTTGAAACAAAGGGTACCTACGGCTATGGTAATGCTTTATGGCCAAAGGAAGGAGGTTTTGGAAATGGAAAACAGGGAGAAGTTGCTGAGCCAAATGAGTTTATGGACAAGCCATGGAGGCCCCTTACACGGAAGCTGAAGATACCTGCAGCTATTCTGAGCCCATATCGGCTTGTTATTTTTATCCGTTTGATTGTACTTGGACTGTTCCTGGCATGGAGGGTTATGCACAAAAATACTGATGCATTATGGCTATGGGGAATGTCTGTGGTTTGTGAGATCTGGTTTGCTTTTTCGTGGATCCTGGATCAACTTCCCAAACTATGCCCAGTGAATCGTGCCACCGATCTTAATATTCTGAAGGAGAAATTTGAAACACCGACTCTTAGCAATCCTACTGGAAAGTCTGATCTTCCAGGCATAGATATCTTTGTCTCTACTGCTGATCCTGACAAAGAACCACCTCTTGTCACCGCCAACACTATCTTGTCTATTTTAGCTGCTGATTACCCAGTTGAGAAGCTGTCATGCTATGTTTCTGATGACGGAGGCGCACTTCTAACTTTTGAGGCAATGGCTGAAGCTGCCAGCTTTGCTAATCAGTGGGTTCCTTTCTGCCGTAAACATGATATAGAGCCAAGAAATCCTGAATCATATTTCAACTTAAAGAAAGACCCTTATAAAAACAAAGTGAAGCTTGATTTTGTCAAGGATCGTAGACGGTTGAAACGTGAGTATGACGAGTTCAAGGTCAGGATTAATAGTCTACCTGACTCTATCCGTCGCCGGTCAGATGCCTATCATTCAAGAGAGGAAATCAATGCCATGAAACTTCAGAGACAAACCAGGGAAGATGAACCTATAGAAACTGCGAAGATTCCCAAAGCAACATGGATGGCTGATGGAACTCATTGGCCAGGGACTTGGTTTAGTCCTACAACTGACCACTCCAAGGGTGACCATGCTGGTATAATTCAGGTGATGTTGAAACCTCCCAGCCACCAACCTCTTCTCGGAAGTGCTGATGATGCAAAGCTTATCGACCTAACTGATATTGATATCCGTCTTCCGCTTCTTGTGTATGTTTCTCGAGAGAAGCGTCCAGGCTATGATCATAACAAAAAAGCGGGGGCCATGAATGCCTTGGTTCGTGCCTCTGCTGTAATGTCTAATGGTCCTTTTATACTCAATCTTGACTGTGATCACTATATCTACAACTCAAAGGCAATGAGGGAAGGCATGTGCTTTATGATGGATCGTGGAGGTGACCGCCTATGTTATGTCCAGTTCCCGCAGAGGTTTGAGGGGATTGATCCCTCTGATAGATATGCTAATCATAACACTGTATTCTTTGATGTGAATATGCGAGCCCTTGATGGACTTCAAGGGCCGTTCTATGTGGGAACCGGTTGCCTTTTTAGAAGGGTTGCACTTTATGGTTTTGACCCTCCTCGCTCTAAAGAGCACCACTCAGGTTTCTGTTCTTGCTGCTTTGGTCGTAAGAAGAAGCATGAATCATTAGCAAGCACCCCAGAAGAGAATAGAGCACTAAGGATGGGTGATGATGAAGAAGAAGAAGAAGAAATGAACCTATCGTCGTTCCCTAAGAAGTTTGGAAACTCAACTTGCCTCATTGACTCAATCCCAGTGGCAGAGTTCCAGGGCCGGCCACTCGCTGATCACCCCATAGTGAAAAATGGACGCCCACCTGGTGCTCTCACCTTACCCCGTGATCTTCTCGATGCATCAACTGTAGCAGAGGCTATCAGTGTCATCTCTTGTTGGTATGAGGACAAGACTGAGTGGGGGCAGCGTGTTGGATGGATCTATGGATCTGTTACGGAGGATGTGGTCACCGGATATAGGATGCACAATAGGGGATGGAAATCTGTGTACTGTGTGACAAAGCGTGATGCCTTCCGTGGATCTGCTCCTATCAATCTCACTGACAGGCTACATCAGGTTCTTCGATGGGCTACTGGCTCCGTTGAAATATTCTTCTCTCGTAACAATGCCATTCTGGCTAGCCCAAGAATGAAACTTCTTCAAAGAGTTGCATACCTTAATGTTGGATTGTATCCCTTCACTTCCTTCTTCCTTATTGTATACTGCTTCCTACCTGCACTGTCACTCTTCTCTGGCAAGTTCATAGTTCAAACCCTTAATATCACATTTCTCTCGTATCTCTTAGGCATCACAGTAACCTTGTGCATCCTAGCAGTGCTTGAAATCAAGTGGTCTGGCATTGAACTTGAAGAGTGGTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGGACGAGCGCTCATCTAGCCGCAGTGCTTCAAGGTTTGCTCAAAATCATAGCTGGTATCGAAATCTCATTCACATTGACTTCAAAATCTGGCGCCGATGACATAGATGATGAGTTTGCTGATCTATATGTTGTGAAATGGTCATCACTTATGATACCACCAATCACAATCATATTGGTTAACTTGATAGCAATAGCAGTTGGAGTTGGCAGAACCATTTACAGTGCTATACCGCAATGGAGCCGTTTACTAGGCGGCGTTTTCTTCAGTTTTTGGGTCTTAACTCATCTCTATCCGTTCGCAAAAGGTTTGATGGGAAGAAGAGCGCGGATACCTACCATTGTTTATGTATGGTCAGGCCTCATTGCTATCACAATCTCTCTTCTCTGGGTAGCAATTAATCCTCCTCCTGGCAGTAAACAAATTGGTGGTTCATTTCATTTCCCATGA 3387 0.4455 MSDAYEGQEPPVPPTVRFARRTSSGRYVSYSRDDLDSEHESGDFMNYTVHIPPTPDNQPMDPSISQKVEEIYVSNSLFTGGFNSVTRAHLMDKIIESEANHPQIAGAKGSSCAVLGCDSKVMSDERGVDILPCECDFKICRDCYLDAIKMGGGACLGCKEPYKNAELDVDDDHSLSLPLPSGISKMERRMSKMKSTNKSALMRSQTGELDHNRNLFETKGTYGYGNALWPKEGGFGNGKQGEVAEPNEFMDKPWRPLTRKLKIPAAILSPYRLVIFIRLIVLGLFLAWRVMHKNTDALWLWGMSVVCEIWFAFSWILDQLPKLCPVNRATDLNILKEKFETPTLSNPTGKSDLPGIDIFVSTADPDKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANQWVPFCRKHDIEPRNPESYFNLKKDPYKNKVKLDFVKDRRRLKREYDEFKVRINSLPDSIRRRSDAYHSREEINAMKLQRQTREDEPIETAKIPKATWMADGTHWPGTWFSPTTDHSKGDHAGIIQVMLKPPSHQPLLGSADDAKLIDLTDIDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAVMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPFYVGTGCLFRRVALYGFDPPRSKEHHSGFCSCCFGRKKKHESLASTPEENRALRMGDDEEEEEEMNLSSFPKKFGNSTCLIDSIPVAEFQGRPLADHPIVKNGRPPGALTLPRDLLDASTVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGSAPINLTDRLHQVLRWATGSVEIFFSRNNAILASPRMKLLQRVAYLNVGLYPFTSFFLIVYCFLPALSLFSGKFIVQTLNITFLSYLLGITVTLCILAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKIIAGIEISFTLTSKSGADDIDDEFADLYVVKWSSLMIPPITIILVNLIAIAVGVGRTIYSAIPQWSRLLGGVFFSFWVLTHLYPFAKGLMGRRARIPTIVYVWSGLIAITISLLWVAINPPPGSKQIGGSFHFP* 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0060 1128 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 23 1126 - -
Lan17g0060 1128 SUPERFAMILY Nucleotide-diphospho-sugar transferases 371 697 IPR029044 -
Lan17g0060 1128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 176 IPR013083 -
Lan17g0060 1128 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 565 698 IPR029044 -
Lan17g0060 1128 Pfam Cellulose synthase 356 1116 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lan17g0060 1128 Pfam RING/Ubox like zinc-binding domain 116 163 - -
Lan17g0060 1128 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 23 1126 - -
Lan17g0060 1128 SUPERFAMILY RING/U-box 97 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0060 Lan-Chr17 326433 331708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0060 2 1128 Glycosyltransferase AT3G03050 81.233 0.0 1943
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0060 K20924 - gmx:100792604 2093.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0060 17 326433 331708 Lan18g1154 18 16360794 16366286 LSH
Lan17g0060 17 326433 331708 Lan6g0051 6 332355 337588 LSH