Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1241 ATGGAACAACACTTCAAATTATTCCTCTCTCTATTCTCCTTCTTCATTCTCTTCTTCTCTCTTTCTTCATCAACACAAACACAACAAACACAAACCCTACTTCTTCACTCTCTCACTCTTCCTCACGCGCCATCACTCTCATGGCCCGAATCAGAAAAACCCGACCCGGTTCACGAAGAAGAATCTTCAACTTCTTCTTCTTCTCTCTCCCTTTCTCTTCACCACATTGATTCTCTCTCTTCAAACTCAACACCACAACAACTATTCAATCTCAGGCTCAGAAGAGATTCGTATAGAGTGAAATCTCTTTCGGGTCGGGTCAACAATTCAAACGGGTCGGGTTTCAGTAGTTCGATAATATCGGGTTTGGAACAAGGGAGTGGAGAATATTTCACGCGCTTAGGAGTTGGAACACCAGCTAGGTATGTTTATATGGTGATGGATACAGGAAGCGACGTCGTTTGGTTACAATGTGCTCCTTGTAGAAAATGTTACTCACAAACGGGTCGGGTATTTGACCCGAGTAAGTCAAGGTCTTATGCTGGGGTACCATGTGGGGCACCACTTTGTAAGAGATTGGATACTCCTGGCTGTAATAATAGGAACAAGATTTGCCAGTATCAGGTTTCCTATGGTGATGGTTCTTTCACATTTGGTGATTTCAGCACTGAAACGCTGACGTTTAGGAAAACAAGGGTGACACGTGTTGCACTTGGTTGTGGCCATGATAATGAAGGTCTCTTTATTGGTGCAGCCGGTTTATTAGGTCTTGGTCGTGGAAGGTTATCTTTTCCGGTTCAAACCGGTCATCGGTTCAATAACAAATTCTCTTATTGCCTAGTTGATCGGTCTGCTTCTGCCAAACCGTCTTCGGTTATTTTTGGAGACTCGGCCGTTTCCCGAACCGCTCGGTTCACTCCCTTGCTAAAAAACCCGAAGCTTGACACCTTCTACTATGTCGAGCTTCTTGGCATTAGTGTTGGTGGTGCTGCGGTTCGTGGTTTATCGGGTTCACTCTTCCAGCTTGACCATGCCGGCAATGGAGGGGTTATTATTGACTCGGGTACATCCGTGACTAGGTTGACCCAACCCGCTTATATTGCCCTAAGGAATGCATTTCGGGTCGGGGCCTCACATTTAAAACGTGCACCCGAGTTTTCGCTATTTGACACATGCTACGACTTATCCGGGTTAACAGAGGTGAAGGTGCCAACGGTGGTGCTCCACTTTCGTGGTGCTGATGTGTCACTTCCCGCGACGAATTACCTAATTCCGGTGGATAGCAGCGGTAGCTTCTGCTTCGCCTTCGCCGGAACCATGAATGGGTTATCCATAATTGGTAACATCCAGCAGCAAGGGTTTCGGGTCGTGTATGATTTGGCGGGTTCACGGGTCGGGTTTGCTCCAAGAAGTTGTGTGTGA 1422 0.4677 MEQHFKLFLSLFSFFILFFSLSSSTQTQQTQTLLLHSLTLPHAPSLSWPESEKPDPVHEEESSTSSSSLSLSLHHIDSLSSNSTPQQLFNLRLRRDSYRVKSLSGRVNNSNGSGFSSSIISGLEQGSGEYFTRLGVGTPARYVYMVMDTGSDVVWLQCAPCRKCYSQTGRVFDPSKSRSYAGVPCGAPLCKRLDTPGCNNRNKICQYQVSYGDGSFTFGDFSTETLTFRKTRVTRVALGCGHDNEGLFIGAAGLLGLGRGRLSFPVQTGHRFNNKFSYCLVDRSASAKPSSVIFGDSAVSRTARFTPLLKNPKLDTFYYVELLGISVGGAAVRGLSGSLFQLDHAGNGGVIIDSGTSVTRLTQPAYIALRNAFRVGASHLKRAPEFSLFDTCYDLSGLTEVKVPTVVLHFRGADVSLPATNYLIPVDSSGSFCFAFAGTMNGLSIIGNIQQQGFRVVYDLAGSRVGFAPRSCV* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1241 473 Gene3D Acid Proteases 294 473 IPR021109 -
Lan16g1241 473 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 350 361 IPR001969 GO:0004190|GO:0006508
Lan16g1241 473 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 18 472 - -
Lan16g1241 473 PANTHER ASPARTYL PROTEASES 18 472 IPR001461 GO:0004190|GO:0006508
Lan16g1241 473 Pfam Xylanase inhibitor C-terminal 318 468 IPR032799 -
Lan16g1241 473 MobiDBLite consensus disorder prediction 45 64 - -
Lan16g1241 473 CDD cnd41_like 129 472 IPR033873 -
Lan16g1241 473 Pfam Xylanase inhibitor N-terminal 130 296 IPR032861 -
Lan16g1241 473 Gene3D Acid Proteases 108 293 IPR021109 -
Lan16g1241 473 PRINTS Pepsin (A1) aspartic protease family signature 136 156 IPR001461 GO:0004190|GO:0006508
Lan16g1241 473 PRINTS Pepsin (A1) aspartic protease family signature 350 361 IPR001461 GO:0004190|GO:0006508
Lan16g1241 473 PRINTS Pepsin (A1) aspartic protease family signature 444 459 IPR001461 GO:0004190|GO:0006508
Lan16g1241 473 ProSiteProfiles Peptidase family A1 domain profile. 130 468 IPR033121 -
Lan16g1241 473 SUPERFAMILY Acid proteases 125 472 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1241 Lan-Chr16 20442626 20445518 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1241 128 472 Miscellaneous Gene Families AT1G77480 27.321 2.04e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1241 K22683 - gmx:100794269 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g1241 16 20442626 20445518 Lan2g0739 2 15704152 15705849 PCT
Lan2g0739 2 15704152 15705849 Lan16g1241 16 20442626 20445518 PCT