Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1177 ATGGAGAAGGAGCCAAGCCAGCTGAGGCGGGCGGCGATTCATGCTTCCGCTGGTGCTATTTCTGGTGGTATATCAAGAACTGTCACCTCGCCCCTTGATGTTATTAAGATTAGATTTCAGGTTCAACTTGAGCCAACATCTTCATGGACTTCATCACACAAGGATTTGTCAGCACCATCGAAATATACGGGCATGCTTCAAGCAACCAAAGATATTTTTAGAGAAGAAGGTTTACGGGGTTTTTGGCGGGGCAATGTGCCAGCTTTGCTCATGGTTATGCCATATACAGCCATACAATTTACAGTTTTACATAAGTTGAAGACATTTGCCTCTGGTTCTTCGAAGCCAGAGGATCACGTTAATTTGAGCCCTTATCTATCCTATGTGAGTGGGGCATTAGCCGGATGTGCAGCTACCGTAGGGTCATATCCCTTTGATCTTCTCCGGACCATATTAGCTTCTCAGGGTGAACCAAAGGTGTATCCAACCATGAAATCAGCATTCATTGATATCTTCAGGGCTCGTGGCTTCCCAGGCGTGTATGCTGGATTGTCACCAACACTAGTCGAGATTATACCTTATGCAGGCCTACAATTTGGCACCTATGATACATTTAAACGTTGGGCCATGGGGTGGAACCATCTTCACCATTCTACCACTACTGAAGAAGATAACCTGTCCGGCTTTCAGCTTTTCCTGTGTGGGTTGGCTGCAGGAACATGTGCCAAGCTTATCTGTCATCCACTTGATGTGCTGAAGAAAAGATTTCAGATTGAAGGTCTACAAAGGCATCCGAGATATGGAGCGACAGTCGAGCACCGAGCATACACAAATATGCTCGATGCATTGCGACGTATATTACAGGCAGAGGGTTGTGCTGGTCTATATAAGGGGATAGTACCATCAACTGTTAAAGCTGCACCAGCTGGTGCTGTAACATTTGTTGCATATGAATTGACATCAAATTGGCTGGAATCTATTTTGACTTGA 990 0.4525 MEKEPSQLRRAAIHASAGAISGGISRTVTSPLDVIKIRFQVQLEPTSSWTSSHKDLSAPSKYTGMLQATKDIFREEGLRGFWRGNVPALLMVMPYTAIQFTVLHKLKTFASGSSKPEDHVNLSPYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMKSAFIDIFRARGFPGVYAGLSPTLVEIIPYAGLQFGTYDTFKRWAMGWNHLHHSTTTEEDNLSGFQLFLCGLAAGTCAKLICHPLDVLKKRFQIEGLQRHPRYGATVEHRAYTNMLDALRRILQAEGCAGLYKGIVPSTVKAAPAGAVTFVAYELTSNWLESILT* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1177 329 Pfam Mitochondrial carrier protein 13 110 IPR018108 -
Lan16g1177 329 Pfam Mitochondrial carrier protein 227 324 IPR018108 -
Lan16g1177 329 Pfam Mitochondrial carrier protein 123 210 IPR018108 -
Lan16g1177 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 9 109 IPR018108 -
Lan16g1177 329 SUPERFAMILY Mitochondrial carrier 10 318 IPR023395 -
Lan16g1177 329 Gene3D Mitochondrial carrier domain 6 326 IPR023395 -
Lan16g1177 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 208 IPR018108 -
Lan16g1177 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 226 323 IPR018108 -
Lan16g1177 329 PRINTS Mitochondrial carrier protein signature 14 27 IPR002067 GO:0055085
Lan16g1177 329 PRINTS Mitochondrial carrier protein signature 27 41 IPR002067 GO:0055085
Lan16g1177 329 PRINTS Mitochondrial carrier protein signature 84 104 IPR002067 GO:0055085
Lan16g1177 329 PRINTS Mitochondrial carrier protein signature 137 155 IPR002067 GO:0055085
Lan16g1177 329 PRINTS Mitochondrial carrier protein signature 181 199 IPR002067 GO:0055085
Lan16g1177 329 PRINTS Mitochondrial carrier protein signature 235 257 IPR002067 GO:0055085
Lan16g1177 329 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 4 328 - -
Lan16g1177 329 PANTHER SOLUTE CARRIER FAMILY 25 4 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1177 Lan-Chr16 19179543 19186351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1177 4 329 Organic Solute Cotransporters AT3G21390 72.121 3.39e-177 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1177 K15108 - gmx:100783563 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1011 1 20510307 20514758 Lan16g1177 16 19179543 19186351 PCT
Lan16g1177 16 19179543 19186351 Lan1g1011 1 20510307 20514758 PCT