Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1170 ATGGTTGTGCTTTTTCAACCCTCTCCGATTCCCTTTCCATCAATGGGTGTCATCACTTCCCACCGTAAGCGCCCTCAAGAATGCATGAACCTTAATGAAACCAATAATCCTCAATCTCCTATTCCCAATTCTTCTTCGTATAAAAGACCCAAAATTTCATCATCCGCACCCTCCCCACCCGTTTCGTCATCATCATCATGCAATGGTACTGTTGTTTCGAGAATTTCTCGATACCCCGAAGTCAAGCTACCGTTGGTTAGAGAGGTGCACGCTCCTTGCAGGCCTCGAAAGTTTGATTTTTTAACGAAATTCAGAAGTGGGTCGAGCTTTGAAGGTAGGGATAGTGGTGAGTTTGGGGAAAATTTTGATATGGGTAATTGTTTTAGTCGAAAATATGAAAAGGCGAAACGAGAAGCAGTGGCTTCAATTAGATACACCCCAAAGGGGAAAGAGGTTATAGACTTCGACACCGATAGTCGTAATAGGTATAAGGTTTTGGAAGATTTGAGTATTGAAGAGGAGGTTCGTGTTGTCGAAGATGATGTTATTGAGATATATGATTTGGATACTATGGTTGTGGATGATGGAATTCAGGATAAGTCAGTTTCATTAGTTGATTCTGAGTTGGCTAATAGTAACTTGAGGAATAGAGTAGTTAATGCTGAAAAAAAGTGGGACCCTTTTGATTTGAGTGAAGAGCATGATTTTTCGAGTGTTCTTGTTTATAAGAAGTTGCTTGAGTCTGTTAGAGGAAGGGAGCCGGCAACAGAGAGGCTCAAGTTTGAAATTGAACTACAAGAGAAGCGCAGGGATGCGCTTGCTTTGTTGCGTCCAAAGAAGGAACCAGTTGAGGTGATCGAGGAAGTGCCACATGAACCTTTTACCCCTCTTACAAAGAAGGAAATAAGTGAGGTTGAAAAAGCCTTTTATGCTAAACGGAAGAAGATATTGGTTACCCATGAGAATTCTAACATTGAGATCAATGCAGAAAAGTTTCAGTGCCTTAGGCTAGGTGCTTGGTTAAATGATGAGGTGATAAACGTGTACCATGAGCTGCTAAAAGAGAGGGAGAAAAGAGAACCAAAGAAGTTTCTGAAATGTCATTTTTTCAATACATTTTTCTACAAGAAGTTAATAGGTGGCAGGAATAGTTATGATTTCAAATCTGTTAGAAGATGGACCAGCCAAAGGAAATTGGGATATGGTCTAGATGAATGTGATAAAATATTTGTACCTATTCATAAAGAGATCCATTGGTGTTTGGCTGTCATCAATAAGAAAGATGAGAAATTCCAGTATCTTGACTCATTGAAAGGAATGGATAGCCAAGTGCTGAAAGCACTGGCTAGATATTATGTGGACGAAGTGAAGGACAAGACTGGAAAGGAGATTGATGTAAGTTCTTGGGAAAGAGAGTTCGTTGAAGACCTTCCTGAGCAGGAAAATGGGTTTGATTGTGGGGTGTTTATGATCAAATATGCTGACTTCTATAGTAGAGGACTGAGGTTGTGCTTCAAACAGGAAAACATGCCTTATTTCCGGCTTAGGACAGCTAAAGAAATTTTGAGATTGAAAGCCGACTAA 1584 0.4015 MVVLFQPSPIPFPSMGVITSHRKRPQECMNLNETNNPQSPIPNSSSYKRPKISSSAPSPPVSSSSSCNGTVVSRISRYPEVKLPLVREVHAPCRPRKFDFLTKFRSGSSFEGRDSGEFGENFDMGNCFSRKYEKAKREAVASIRYTPKGKEVIDFDTDSRNRYKVLEDLSIEEEVRVVEDDVIEIYDLDTMVVDDGIQDKSVSLVDSELANSNLRNRVVNAEKKWDPFDLSEEHDFSSVLVYKKLLESVRGREPATERLKFEIELQEKRRDALALLRPKKEPVEVIEEVPHEPFTPLTKKEISEVEKAFYAKRKKILVTHENSNIEINAEKFQCLRLGAWLNDEVINVYHELLKEREKREPKKFLKCHFFNTFFYKKLIGGRNSYDFKSVRRWTSQRKLGYGLDECDKIFVPIHKEIHWCLAVINKKDEKFQYLDSLKGMDSQVLKALARYYVDEVKDKTGKEIDVSSWEREFVEDLPEQENGFDCGVFMIKYADFYSRGLRLCFKQENMPYFRLRTAKEILRLKAD* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1170 527 SUPERFAMILY Cysteine proteinases 293 525 IPR038765 -
Lan16g1170 527 Coils Coil 204 224 - -
Lan16g1170 527 MobiDBLite consensus disorder prediction 29 69 - -
Lan16g1170 527 Gene3D Adenoviral Proteinase; Chain A 283 525 - -
Lan16g1170 527 ProSiteProfiles Ubiquitin-like protease family profile. 325 497 IPR003653 GO:0006508|GO:0008234
Lan16g1170 527 Pfam Ulp1 protease family, C-terminal catalytic domain 340 521 IPR003653 GO:0006508|GO:0008234
Lan16g1170 527 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 15 176 - -
Lan16g1170 527 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 190 526 - -
Lan16g1170 527 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 190 526 - -
Lan16g1170 527 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 15 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1170 Lan-Chr16 19036360 19044371 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1170 K08592 - gmx:100797013 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1276 12 18590216 18595780 Lan16g1170 16 19036360 19044371 PCT
Lan16g1170 16 19036360 19044371 Lan12g1276 12 18590216 18595780 PCT