Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0889 ATGGGAGTTGTAACTGTTGGTGAATTGAAGCATGGCATTTCAGGGAAAAGGACATTTCATCCAAGTTCAAGCATAAGGCATGCTACTGAATGGCCAATATCTGATGTCTCTAGTGATATTACAATTGAAATAGGAACATCAATCTTCACACTTCACAAGTTTCCTCTTGTTTCAAGGAGTGGAAGAATTCGGAAAATGCTGTTAGAAGCAAGAGATTCAAAAGTTTCGCGCATTAGTCTCCCGAATGTTCCAGGTGGTGCAGAGGCGTTTGATCTAGCTGCAAAGTTCTGCTATGGAGTTAACATCGAGTTTACTCTCTCAAATGTCGCTATGGTAAGTTGTGCAGCTCATTTTCTTGAAATGAACGAAGAATTTTCGGAGAAAAACTTGGCGACAAGGGCTGAATCATATTTAAAGGAGACAGTGTTCCCTAATATAACAAGCACCATAAGTGTTCTTCACCATTGTGAAACTCTTCTTCCCATATCAGAACAAATTGGCCTTGTTAGCAGATTCATCAATGCAATAGCAAATAATGCATGCAAAGAGCAACTTACCTCTGGCTTGCATAAACTTGATCACAATTTTCCTTCTAAAACCTTCTCGAAAACCATGGAACCCGAAACACCCTCAGATTTGTGGGTGAAATCTTTCAATGTTCTCAATCTCGATTTCTTTCGTAGAGCTTTATCTGTGGTGAAATCAAAGGGACTAAAACAAGACATGATCAGCAAGATTTTGATAAACTATGCACATAATTCTCTTCAAGGGATTTCTGTTAGGGACCCTCAAATTGTAAAAAGAAGTTCACTTGACTTAGAATATCATAAGAAACAAAGGGTCATTGTTGAAACTATAGTTTGTTTACTACCAACTCAATCAAGGAAAAGTTTGGTTCCAATGGCATTTCTCTCATTTTTGTTGAAAGCTGCAATATCAGCATTAGCATCAACTCATTGTAGGTCTGATTTAGAGAGGAGAATAGGCCTACAACTTGACCAGGCAATTCTCGAAGACATTCTTATTCCGACAAACTCGCCTCAAAATACTCATAGCATAATGTATGACACAGATTCAATGTTGAGGATTTTTTCGATTTTTATCAACTTGGATGAGGATGATGACGATGACGAAGATTGTTGCTTCAGAGATGAAAGTGAAATGGTTTATGACTTTGATAGCCTTGGATCTCCAAAACAAAGCTCAATTCTTAAGGTATCAAAATTGCTAGACAATTATCTTGCTGAAGTAGCACTAGACTCAAATTTGTTGCCATCAAAATTCATAGCACTTGCAGAACTACTTCCTGATCATGCACGCATCGTAAGTGATGGACTCTATAGAGCTGTTGATATATTCCTTAAGGTTCATCCAAACATGAAGGACTCGGAGCGCTACCGTCTATGCAAAACCATCGATAGCCAGAAACTATCTCAAGAAGCATGCAGCCATGCAGCACAAAATGAAAGACTACCAGTGCAAATGGCAGTTCAGGTTCTTTACTTCGAGCAAATAAGGCTTCGCAACGCCATGAATGGAGGCCACAACCAATTTTTCTTTGGTGGAATTCAGGGTCAGTTTCCTCAACGCTCAGGAAGTGGTGCAGAAAGTGGAGCCATTTCACCAAGAGATAACTATGCATCAGTGAGAAGAGAGAACAAAGATCTGAAACTTGAGGTTGCAAGAATGAGAATGAGGCTCACTGATTTGGAGAAAGATCATTTTTCTATGAAGAAGGAGCTTGTAAAGTCTCACCCTGCCAACAAGATTTTTAAATCCTTTACCAAGAAACTAAGCAAACTCAATGCTCTATTTAGGATAAATAATGTTAAGCCAATTAGTTCTGAAAGTCGATTCCCATTTCCTAAGCGAAGACGTCACTCAGTTTCATAA 1893 0.3883 MGVVTVGELKHGISGKRTFHPSSSIRHATEWPISDVSSDITIEIGTSIFTLHKFPLVSRSGRIRKMLLEARDSKVSRISLPNVPGGAEAFDLAAKFCYGVNIEFTLSNVAMVSCAAHFLEMNEEFSEKNLATRAESYLKETVFPNITSTISVLHHCETLLPISEQIGLVSRFINAIANNACKEQLTSGLHKLDHNFPSKTFSKTMEPETPSDLWVKSFNVLNLDFFRRALSVVKSKGLKQDMISKILINYAHNSLQGISVRDPQIVKRSSLDLEYHKKQRVIVETIVCLLPTQSRKSLVPMAFLSFLLKAAISALASTHCRSDLERRIGLQLDQAILEDILIPTNSPQNTHSIMYDTDSMLRIFSIFINLDEDDDDDEDCCFRDESEMVYDFDSLGSPKQSSILKVSKLLDNYLAEVALDSNLLPSKFIALAELLPDHARIVSDGLYRAVDIFLKVHPNMKDSERYRLCKTIDSQKLSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMNGGHNQFFFGGIQGQFPQRSGSGAESGAISPRDNYASVRRENKDLKLEVARMRMRLTDLEKDHFSMKKELVKSHPANKIFKSFTKKLSKLNALFRINNVKPISSESRFPFPKRRRHSVS* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0889 630 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 25 623 - -
Lan16g0889 630 SMART BTB_4 38 130 IPR000210 GO:0005515
Lan16g0889 630 ProSiteProfiles NPH3 domain profile. 212 506 IPR027356 -
Lan16g0889 630 SUPERFAMILY POZ domain 18 123 IPR011333 -
Lan16g0889 630 Pfam BTB/POZ domain 37 123 IPR000210 GO:0005515
Lan16g0889 630 PANTHER OS12G0117600 PROTEIN 25 623 IPR043454 -
Lan16g0889 630 Coils Coil 546 573 - -
Lan16g0889 630 ProSiteProfiles BTB domain profile. 38 106 IPR000210 GO:0005515
Lan16g0889 630 Pfam NPH3 family 212 482 IPR027356 -
Lan16g0889 630 Gene3D Potassium Channel Kv1.1; Chain A 16 138 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0889 Lan-Chr16 15689112 15692808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0889 1 456 EF-hand Containing Proteins AT2G47860 55.967 3.97e-175 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0889 - - gmx:100814622 1000.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0889 16 15689112 15692808 Lan8g0657 8 8782768 8787256 PCT
Lan8g0657 8 8782768 8787256 Lan16g0889 16 15689112 15692808 PCT