Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0626 ATGGACAGTGAAGTACTCGACATCTTTAACAAGTTCGACAAGAACGGCGACGGCAAGATCTCCTGCGCCGAGCTCAAGGACCTCATGGTGGCGCTGGGATCCAAGACGACGGCGGATGAGGTCAGTCGCATGATGGCGGAGCTTGACCAGGACGGCGACGGTTACGTTGATCTCAAGGAGTTCGGAGATTTTCACTTCGCCGGTAACAGCGATGCGAAGGAGCTCCGGGAGGTGTTTGAGATGTATGATCTGGATAAGAACGGGGTGATTTCGGCGACGGAACTGCACGCTGTGATGCAGAGACTGGGGGAGAAATGCTCCATCGGCGAGTGCCGGAGGATGATCGGAAATGTTGACGCCGATGGCGATGGTAATGTGAACTTTCAAGAGTTCAAAAGGATGATGACTCGCTCGTAG 417 0.542 MDSEVLDIFNKFDKNGDGKISCAELKDLMVALGSKTTADEVSRMMAELDQDGDGYVDLKEFGDFHFAGNSDAKELREVFEMYDLDKNGVISATELHAVMQRLGEKCSIGECRRMIGNVDADGDGNVNFQEFKRMMTRS* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0626 138 CDD EFh 4 61 IPR002048 GO:0005509
Lan16g0626 138 SMART efh_1 74 102 IPR002048 GO:0005509
Lan16g0626 138 SMART efh_1 110 138 IPR002048 GO:0005509
Lan16g0626 138 SMART efh_1 40 68 IPR002048 GO:0005509
Lan16g0626 138 SMART efh_1 4 32 IPR002048 GO:0005509
Lan16g0626 138 ProSitePatterns EF-hand calcium-binding domain. 119 131 IPR018247 -
Lan16g0626 138 ProSitePatterns EF-hand calcium-binding domain. 83 95 IPR018247 -
Lan16g0626 138 ProSiteProfiles EF-hand calcium-binding domain profile. 70 105 IPR002048 GO:0005509
Lan16g0626 138 CDD EFh 74 136 IPR002048 GO:0005509
Lan16g0626 138 ProSiteProfiles EF-hand calcium-binding domain profile. 106 138 IPR002048 GO:0005509
Lan16g0626 138 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 138 - -
Lan16g0626 138 Gene3D - 1 68 - -
Lan16g0626 138 SUPERFAMILY EF-hand 3 137 IPR011992 -
Lan16g0626 138 Pfam EF-hand domain pair 7 61 IPR002048 GO:0005509
Lan16g0626 138 Pfam EF-hand domain pair 74 135 IPR002048 GO:0005509
Lan16g0626 138 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Lan16g0626 138 ProSiteProfiles EF-hand calcium-binding domain profile. 36 64 IPR002048 GO:0005509
Lan16g0626 138 Gene3D - 69 138 - -
Lan16g0626 138 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 138 - -
Lan16g0626 138 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0626 Lan-Chr16 7951846 7952400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0626 3 61 EF-hand Containing Proteins AT1G18210 35.593 8.76e-08 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0626 K13448 - gmx:100806813 229.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0626 16 7951846 7952400 Lan11g0297 11 1926765 1927594 PCT
Lan11g0297 11 1926765 1927594 Lan16g0626 16 7951846 7952400 PCT