Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0297 ATGGACGACGAAGTTCGTGAGATCTTCAACAAGTTCGATAAAAACGGCGACGGCAAGATCTCGTGTTCGGAGCTGAAGGAGATGCTTATTGCTCTCGGATCCAAAACTACGTCTGATGAGGTGCGCCTCATGATGGAGATTATAGACCAAAACGGCGACGGTTACATTGATCTCAAGGAGTTCGCCGATTTTCACTGTACTAAAGACTCCGGCGCCGACGATTCTAAGGAGTTGAGAGACGCTTTCGATCTCTATGATATCGACAAGAACGGACTCATCTCTGCAAACGAACTTCACAGTGTGCTGAAGAAGCTCGGAGAGACTTGTTCCCTCGGAGATTGCCGAAGAATGATCCGCAACGTCGACGCCGACGGTGACGGCAGTGTTAACTTCGAGGAATTCAAAAAAATGATGGCTCGTAGTTAG 426 0.4836 MDDEVREIFNKFDKNGDGKISCSELKEMLIALGSKTTSDEVRLMMEIIDQNGDGYIDLKEFADFHCTKDSGADDSKELRDAFDLYDIDKNGLISANELHSVLKKLGETCSLGDCRRMIRNVDADGDGSVNFEEFKKMMARS* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0297 141 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 141 - -
Lan11g0297 141 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 141 - -
Lan11g0297 141 Pfam EF-hand domain pair 77 138 IPR002048 GO:0005509
Lan11g0297 141 Pfam EF-hand domain pair 4 64 IPR002048 GO:0005509
Lan11g0297 141 Gene3D - 1 68 - -
Lan11g0297 141 SUPERFAMILY EF-hand 3 139 IPR011992 -
Lan11g0297 141 ProSitePatterns EF-hand calcium-binding domain. 86 98 IPR018247 -
Lan11g0297 141 ProSiteProfiles EF-hand calcium-binding domain profile. 73 108 IPR002048 GO:0005509
Lan11g0297 141 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Lan11g0297 141 ProSiteProfiles EF-hand calcium-binding domain profile. 36 71 IPR002048 GO:0005509
Lan11g0297 141 Gene3D - 69 141 - -
Lan11g0297 141 ProSitePatterns EF-hand calcium-binding domain. 122 134 IPR018247 -
Lan11g0297 141 ProSitePatterns EF-hand calcium-binding domain. 49 61 IPR018247 -
Lan11g0297 141 SMART efh_1 40 68 IPR002048 GO:0005509
Lan11g0297 141 SMART efh_1 77 105 IPR002048 GO:0005509
Lan11g0297 141 SMART efh_1 113 141 IPR002048 GO:0005509
Lan11g0297 141 SMART efh_1 4 32 IPR002048 GO:0005509
Lan11g0297 141 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Lan11g0297 141 ProSiteProfiles EF-hand calcium-binding domain profile. 109 141 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0297 Lan-Chr11 1926765 1927594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0297 3 138 EF-hand Containing Proteins AT1G66400 52.899 3.00e-48 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0297 K13448 - gmx:100796491 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0626 16 7951846 7952400 Lan11g0297 11 1926765 1927594 PCT
Lan11g0297 11 1926765 1927594 Lan16g0626 16 7951846 7952400 PCT